G42269


Basic Information

Item Value
gene id G42269
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 20839589 ~ 20840560 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU52658
cagcattttcacacaaCACCTTGCTTCAATTATAACAAAGGCTACTTTTATGTCATGTAGCACACTGTGCATTTTCACTGAAATGGTCTGGCAGCATCTGCACAAAGTGTTCGCATGTTAGGAGACATAAATGTagacattttgttatgtttcatAACAAAATGTCTACATTTATGTCTCCTAACACATCGGATGATTCAAAAATGTGGATTGGAGTATTTTAGCTGTTACTGGCTTTACAAAACATTGCTTAAGTTATAGGAAGAAACTGATTACTGTATATTAGTTGAGTAATCCATAAAGTTTTAGTGCTAACATCAAGCACGACTAGCTCAAAAGCTGTAGTAAGAGAAAAGCCAGCTGAACATCATTGTAATGTTAGGAGTCTTGGTCAGGTACATtcgtttatttttctttccttttcccaTATAAACAAGGAATGCAACATTTTTGGGAACAACTCTATATTCACCTCTTATAGCTTCATTTAAACTAGTGGTCTGCATCCCTGGTCCTGGATAGTCACAGTGCATTCTGtgtttaattttacttaattaatgaGTTTCCATGTTTTCCATGTTCCCTCTCAGTGAGTAACCTCTAAAATCGTCAGGAAAGGATGGCAGCATAATAATGATGTTAGCACAAGCAAAATATATTCGTCTAAATTGTTATCGATACTTGACGATAAATCTGAGAATATATCAGGATTGCTTTACTTTATACAAGAACAACTGCATTTCTAATTTGCTAATCAGCCTTTTACTATCACCTGTGTGAGATTTTACATCCGTAATTTCGCCATGGTAAAATATTGGTAAAAAATTGTTTTACAGtgcatttactttttgtattattatgtatttatttttatcagtgaTTACTATTCTTCTCAATAGATTTTCTTCTTAAAGCCTTTTTTAAcacttacagtgggggaaaaaagtatttgatcccctgctgattttgtac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU52658 True 972 lncRNA 0.34 1 20839589 20840560

Neighbor

gene id symbol gene type direction distance location
AMCG00013101 NA coding upstream 8590 20817521 ~ 20830999 (+)
AMCG00013098 NA coding upstream 64288 20773228 ~ 20775301 (+)
AMCG00013099 NA coding upstream 70996 20760866 ~ 20768593 (+)
AMCG00013091 bsk146,LOC103373441,LOC104933992 coding upstream 189326 20641692 ~ 20650263 (+)
AMCG00013093 NA coding upstream 214291 20567147 ~ 20625298 (+)
AMCG00013100 NA coding downstream 119861 20960421 ~ 20980242 (+)
AMCG00013104 pts coding downstream 148293 20988853 ~ 20999310 (+)
AMCG00013105 NA coding downstream 189005 21029565 ~ 21075759 (+)
AMCG00013107 wu:fd14a01,LOC108254800,LOC107571573 coding downstream 345186 21185746 ~ 21216078 (+)
AMCG00013109 NA coding downstream 424630 21265190 ~ 21269791 (+)
G42177 NA non-coding upstream 212255 20627094 ~ 20627334 (+)
G42172 NA non-coding upstream 287772 20551260 ~ 20551817 (+)
G42127 NA non-coding upstream 446980 20387684 ~ 20392609 (+)
G42077 NA non-coding upstream 851729 19986178 ~ 19987860 (+)
G42054 NA non-coding upstream 1252796 19586528 ~ 19586793 (+)
G42277 NA non-coding downstream 49115 20889675 ~ 20890332 (+)
G42330 LOC106589491,LOC105023009,LOC103368359,LOC100710639,LOC102784652,LOC102295130 non-coding downstream 416025 21256585 ~ 21304213 (+)
G42331 LOC100710639,LOC102784652,LOC102295130,LOC102192639,LOC101477534,LOC108412652 non-coding downstream 523544 21364104 ~ 21411989 (+)
G42345 LOC777982,LOC104957706 non-coding downstream 632156 21472716 ~ 21508824 (+)
G42347 NA non-coding downstream 658413 21498973 ~ 21503924 (+)
G41978 NA other upstream 1810311 19025561 ~ 19029278 (+)
AMCG00013068 NA other upstream 1865227 18967429 ~ 18974362 (+)
AMCG00013047 NA other upstream 2609351 18158842 ~ 18230238 (+)
AMCG00013015 NA other upstream 4110056 16719355 ~ 16729533 (+)
AMCG00012987 NA other upstream 5047962 15782364 ~ 15791627 (+)
G42326 LOC105030495,LOC106938339,LOC103143718,LOC103461378 other downstream 429115 21269675 ~ 21278728 (+)
AMCG00013118 LOC106594791 other downstream 445471 21286031 ~ 21471560 (+)
AMCG00013126 myhb,LOC108443910 other downstream 530283 21370843 ~ 21421316 (+)
G42344 LOC108412647 other downstream 586100 21426660 ~ 21486808 (+)
G42453 NA other downstream 1401869 22242429 ~ 22245790 (+)

Expression


Co-expression Network