G42330 (LOC106589491,LOC105023009,LOC103368359,LOC100710639,LOC102784652,LOC102295130)


Basic Information

Item Value
gene id G42330
gene name LOC106589491,LOC105023009,LOC103368359,LOC100710639,LOC102784652,LOC102295130
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 21256585 ~ 21304213 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU52751
CTTACAGACTGGACTTGCAACAGCAGGTCATTATTTTCCTGCAGCAGAGACACCATCTTCTCCTCAAGCTCCTTTCTCTTGGCTTCTGCCTTTTTCAGATCTTCCTTGCACTTCACAAATTCTTCCTTCATGTTGGCAAATTCCTTCTCAGTTTCTGCGCTCTTCAGAAGTGGCTTGATCTTGAAGTACAGCTTCATCCATGGCCAGTGTTTCACATTCATGAATGAGCGGATGTTGTATTGGATGGAGAAGATGCCCATTGGCT
>TU52752
CTTACAGACTGGACTTGCAACAGCAGGTCATTCTTTTCCTGTAGAAGAGACACCATTTTCTCTTCTAGGTCCTTTCTCTTAGCTTCTGCCTTTGCCAGATCTTCCTTGCACTTGGCAAATTCTTCCTTCATGTTGGCAAATTCCTTCTCTGCCTCTGCGCTCCTCAGAAGTGGCTTGATCTTGAAGTACAGCTTCATCCATGGCCAGTGTTTCACATTCATGAATGAGCGGATGTTGTATTGGATGGTGAAAAcggactctctg

Function

NR:

description
PREDICTED: myosin heavy chain, fast skeletal muscle-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU52751 True 265 lncRNA 0.45 2 21256585 21259588
TU52752 False 264 lncRNA 0.45 2 21256585 21304213

Neighbor

gene id symbol gene type direction distance location
AMCG00013107 wu:fd14a01,LOC108254800,LOC107571573 coding upstream 40507 21185746 ~ 21216078 (+)
AMCG00013105 NA coding upstream 180826 21029565 ~ 21075759 (+)
AMCG00013104 pts coding upstream 257275 20988853 ~ 20999310 (+)
AMCG00013100 NA coding upstream 276343 20960421 ~ 20980242 (+)
AMCG00013101 NA coding upstream 425586 20817521 ~ 20830999 (+)
AMCG00013122 LOC108261602,LOC108254796 coding downstream 36797 21341010 ~ 21343727 (+)
AMCG00013123 NA coding downstream 39651 21343864 ~ 21345063 (+)
AMCG00013121 NA coding downstream 46449 21350662 ~ 21359707 (+)
AMCG00013128 LOC106597527,LOC106569817,LOC106606262,LOC106596646,LOC106585883,LOC106596400 coding downstream 58102 21362315 ~ 21362913 (+)
AMCG00013119 LOC106565367,LOC777984 coding downstream 95193 21399406 ~ 21400312 (+)
G42277 NA non-coding upstream 366253 20889675 ~ 20890332 (+)
G42269 NA non-coding upstream 416025 20839589 ~ 20840560 (+)
G42177 NA non-coding upstream 629251 20627094 ~ 20627334 (+)
G42172 NA non-coding upstream 704768 20551260 ~ 20551817 (+)
G42127 NA non-coding upstream 863976 20387684 ~ 20392609 (+)
G42331 LOC100710639,LOC102784652,LOC102295130,LOC102192639,LOC101477534,LOC108412652 non-coding downstream 59891 21364104 ~ 21411989 (+)
G42345 LOC777982,LOC104957706 non-coding downstream 168503 21472716 ~ 21508824 (+)
G42347 NA non-coding downstream 194760 21498973 ~ 21503924 (+)
G42350 NA non-coding downstream 224568 21528781 ~ 21600968 (+)
G42448 NA non-coding downstream 844081 22148294 ~ 22148513 (+)
G41978 NA other upstream 2227307 19025561 ~ 19029278 (+)
AMCG00013068 NA other upstream 2282223 18967429 ~ 18974362 (+)
AMCG00013047 NA other upstream 3026347 18158842 ~ 18230238 (+)
AMCG00013015 NA other upstream 4527052 16719355 ~ 16729533 (+)
AMCG00012987 NA other upstream 5464958 15782364 ~ 15791627 (+)
AMCG00013126 myhb,LOC108443910 other downstream 66630 21370843 ~ 21421316 (+)
G42344 LOC108412647 other downstream 122447 21426660 ~ 21486808 (+)
G42453 NA other downstream 938216 22242429 ~ 22245790 (+)
AMCG00013147 NA other downstream 944284 22248497 ~ 22260816 (+)
AMCG00013198 NA other downstream 2937056 24241269 ~ 24331854 (+)

Expression


Co-expression Network