G42331 (LOC100710639,LOC102784652,LOC102295130,LOC102192639,LOC101477534,LOC108412652)


Basic Information

Item Value
gene id G42331
gene name LOC100710639,LOC102784652,LOC102295130,LOC102192639,LOC101477534,LOC108412652
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 21364104 ~ 21411989 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU52753
tcCATATTGCTCAAAGCAGCAGAAATGCTTACAGATTGGACTTGTAGCAGCAGGTCATTCTTCTCCTGCATTAGAGATACCATTTTCTCTTCAAGGTCCTTTTTCCTGGCTTCTGCCTTTGCCAGATCTTCCTTGCACTTGGTAAATTCTTCCTTCATGTTGGCCATTTCCTTCTCTGATTCTGCACTCTTCAGAAGTGGCTTGATCTTGAAGTATAGCTTCATCCATGGCCAGTGTTTCACATTCATGAATGAGCGGATGTTGTATTGGATGGAGAAGATGGATTCTCT

Function

NR:

description
PREDICTED: myosin heavy chain, fast skeletal muscle

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU52753 True 290 lncRNA 0.43 2 21364104 21411989

Neighbor

gene id symbol gene type direction distance location
AMCG00013128 LOC106597527,LOC106569817,LOC106606262,LOC106596646,LOC106585883,LOC106596400 coding upstream 1191 21362315 ~ 21362913 (+)
AMCG00013121 NA coding upstream 4397 21350662 ~ 21359707 (+)
AMCG00013123 NA coding upstream 19041 21343864 ~ 21345063 (+)
AMCG00013122 LOC108261602,LOC108254796 coding upstream 20377 21341010 ~ 21343727 (+)
AMCG00013108 NA coding upstream 78266 21270056 ~ 21285838 (+)
AMCG00013124 LOC103370545,LOC102292730,LOC777984,LOC100705928,LOC102793686,LOC100710639,LOC101481850,LOC102288653 coding downstream 9633 21421622 ~ 21448718 (+)
AMCG00013120 myhz1.2,myhz1.1,myhc4 coding downstream 63629 21475618 ~ 21481280 (+)
AMCG00013140 wu:fd14a01 coding downstream 64271 21476260 ~ 21481280 (+)
AMCG00013142 LOC108412647 coding downstream 74242 21486231 ~ 21486678 (+)
AMCG00013125 LOC108412647 coding downstream 74242 21486231 ~ 21486693 (+)
G42330 LOC106589491,LOC105023009,LOC103368359,LOC100710639,LOC102784652,LOC102295130 non-coding upstream 59891 21256585 ~ 21304213 (+)
G42277 NA non-coding upstream 473772 20889675 ~ 20890332 (+)
G42269 NA non-coding upstream 523544 20839589 ~ 20840560 (+)
G42177 NA non-coding upstream 736770 20627094 ~ 20627334 (+)
G42172 NA non-coding upstream 812287 20551260 ~ 20551817 (+)
G42345 LOC777982,LOC104957706 non-coding downstream 60727 21472716 ~ 21508824 (+)
G42347 NA non-coding downstream 86984 21498973 ~ 21503924 (+)
G42350 NA non-coding downstream 116792 21528781 ~ 21600968 (+)
G42448 NA non-coding downstream 736305 22148294 ~ 22148513 (+)
G42449 NA non-coding downstream 737596 22149585 ~ 22149787 (+)
G42326 LOC105030495,LOC106938339,LOC103143718,LOC103461378 other upstream 85376 21269675 ~ 21278728 (+)
G41978 NA other upstream 2334826 19025561 ~ 19029278 (+)
AMCG00013068 NA other upstream 2389742 18967429 ~ 18974362 (+)
AMCG00013047 NA other upstream 3133866 18158842 ~ 18230238 (+)
AMCG00013015 NA other upstream 4634571 16719355 ~ 16729533 (+)
G42344 LOC108412647 other downstream 14671 21426660 ~ 21486808 (+)
G42453 NA other downstream 830440 22242429 ~ 22245790 (+)
AMCG00013147 NA other downstream 836508 22248497 ~ 22260816 (+)
AMCG00013198 NA other downstream 2829280 24241269 ~ 24331854 (+)
G42846 NA other downstream 3335503 24747492 ~ 24749395 (+)

Expression


Co-expression Network