G42344 (LOC108412647)


Basic Information

Item Value
gene id G42344
gene name LOC108412647
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 21426660 ~ 21486808 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU52771
GGTCTTCCAACAAGTGtgctgcAGGTTAATTAACCAACCTCTTCCTGCGCTTGCTGTCAAGGAAGTAAATCGCCACCATGAGTACGGACGCGGAGATGGCCGTTTTTGGCCCGGCTGCCATATACCTGAGGAAGCCTGAGAAGGAGAGGATTGAGGCTCAGAACAAGCCCTTTGATGCCAAAACTGCCTGCTACGTGATTGATGCCAAGGAGCTGTATGTCAAAGGTGTCATCCAGAGTAAAGAAGGGGGCAAAGCCACTGTCAAGAATGAGAAGGGGGAGACTCTAACAGTCAAGGAGGACGATGTCCACCCAATGAATCCTCCCAAGTACGACAAAATTGAGGACATGGCGATGATGACCCACCTGAACGAGCCCGCTGTGCTGTTTAACCTTAAAGAGCGTTACGCAGCATGGATGATCTACACCTACTCTGGGCTGTTTTGTGCAACTGTGAACCCCTACAAGTNN
>TU52772
TCTAAACAGAATTACATGACCAAATGTAGAAGAATACTTTGCTGCTTTGGCAAAACTGATCTTTATAAAATGAGCTCCAGCAAGCCTCCACTCATAGAGAAGATTGTCAAGATTCCAACAAGTGTGACTGACATCATTTAACACTCAAGTTCCTGGGGTTGGTGTCAAGGAAGTGAGCTTTCATCATGAGTACGGACGCGGAGATGGCCGTTTTTGGCCCAGCTGCCATATACCTGAGGAAGCCTGAGAAGGAGAGGATTGAGGCTCAGAACAAACCATTTGATGCCAAATCTGCCGTCTATGTAACTGATGCAAAGGAGCTGTACGTCAAAGGTGTGGTCCAAAGTAGGGAAGGGGGCAAAGCTACTGTCAAGACTGAGGCTGGCCAAACTGTCACAGTCAAGGAGGATGACGTCTTCCCAATGAATCCTCCCAAGTACGACAAAATTGAGGACATGGCGATGATGACCCACCTGAATGAAGCCTCTGTGCTGTATAACCTCAAAGAGCGTTACGCAGCATGGATGATTTACACCTACTCGGGGCTGTTTTGTGCAACTGTGAACCCCTACAAGTGGCTCCCAGTGTATGATCAANNNNNTGTGAACCCCTACAAGTNN
>TU52773
tctctctctctgcagtgctgcAGGTTAATTAACCAACCTCTTCCTGCGCTTGCTGTCAAGGAAGTAAATCGCCACCATGAGTACGGACGCGGAGATGGCCGTTTTTGGCCCGGCTGCCATATACCTGAGGAAGCCTGAGAAGGAGAGGATTGAGGCTCAGAACAAGCCCTTTGATGCCAAAACTGCCTGCTACGTGATTGATGCCAAGGAGCTGTATGTCAAAGGTGTCATCCAGAGTAAAGAAGGGGGCAAAGCCACTGTCAAGAATGAGAAGGGGGAGACTCTAACAGTCAAGGAGGACGATGTCCACCCAATGAATCCTCCCAAGTACGACAAAATTGAGGACATGGCGATGATGACCCACCTGAACGAGCCCGCTGTGCTGTTTAACCTTAAAGAGCGTTACGCAGCATGGATGATCTACACCTACTCTGGGCTGTTTTGTGCAACTGTGAACCCCTACAAGTNN

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU52771 False 470 TUCP 0.50 5 21484907 21486808
TU52772 True 620 TUCP 0.46 6 21426660 21486808
TU52773 False 469 TUCP 0.51 4 21485321 21486808

Neighbor

gene id symbol gene type direction distance location
AMCG00013119 LOC106565367,LOC777984 coding upstream 26348 21399406 ~ 21400312 (+)
AMCG00013128 LOC106597527,LOC106569817,LOC106606262,LOC106596646,LOC106585883,LOC106596400 coding upstream 63747 21362315 ~ 21362913 (+)
AMCG00013121 NA coding upstream 66953 21350662 ~ 21359707 (+)
AMCG00013123 NA coding upstream 81597 21343864 ~ 21345063 (+)
AMCG00013122 LOC108261602,LOC108254796 coding upstream 82933 21341010 ~ 21343727 (+)
AMCG00013127 NA coding downstream 58811 21545619 ~ 21547056 (+)
AMCG00013129 LOC107756562,LOC108433489,LOC107570719,LOC107695698 coding downstream 64364 21551172 ~ 21585017 (+)
AMCG00013146 dnah9 coding downstream 286434 21773242 ~ 21911741 (+)
AMCG00013148 NA coding downstream 443247 21930055 ~ 22228496 (+)
AMCG00013149 foxk2,LOC107719587,LOC106601484 coding downstream 789534 22276342 ~ 22292501 (+)
G42331 LOC100710639,LOC102784652,LOC102295130,LOC102192639,LOC101477534,LOC108412652 non-coding upstream 14671 21364104 ~ 21411989 (+)
G42330 LOC106589491,LOC105023009,LOC103368359,LOC100710639,LOC102784652,LOC102295130 non-coding upstream 122447 21256585 ~ 21304213 (+)
G42277 NA non-coding upstream 536328 20889675 ~ 20890332 (+)
G42269 NA non-coding upstream 586100 20839589 ~ 20840560 (+)
G42177 NA non-coding upstream 799326 20627094 ~ 20627334 (+)
G42347 NA non-coding downstream 12165 21498973 ~ 21503924 (+)
G42350 NA non-coding downstream 41973 21528781 ~ 21600968 (+)
G42448 NA non-coding downstream 661486 22148294 ~ 22148513 (+)
G42449 NA non-coding downstream 662777 22149585 ~ 22149787 (+)
G42459 NA non-coding downstream 779549 22266357 ~ 22266636 (+)
AMCG00013126 myhb,LOC108443910 other upstream 5344 21370843 ~ 21421316 (+)
G42326 LOC105030495,LOC106938339,LOC103143718,LOC103461378 other upstream 147932 21269675 ~ 21278728 (+)
G41978 NA other upstream 2397382 19025561 ~ 19029278 (+)
AMCG00013068 NA other upstream 2452298 18967429 ~ 18974362 (+)
AMCG00013047 NA other upstream 3196422 18158842 ~ 18230238 (+)
G42453 NA other downstream 755621 22242429 ~ 22245790 (+)
AMCG00013147 NA other downstream 761689 22248497 ~ 22260816 (+)
AMCG00013198 NA other downstream 2754461 24241269 ~ 24331854 (+)
G42846 NA other downstream 3260684 24747492 ~ 24749395 (+)
G42858 NA other downstream 3281616 24768424 ~ 24770148 (+)

Expression


Co-expression Network