G42345 (LOC777982,LOC104957706)


Basic Information

Item Value
gene id G42345
gene name LOC777982,LOC104957706
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 21472716 ~ 21508824 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU52774
TGGGTAATTCTTTACCTTAGACTTGGCTACAGACTCCATGTTGCTGGAGAGGTCATCAATCTCCATTTTGTATTcactcttctccttctccagcttctGCTTGACTCGCTGAAGGTTGTCAATCTGTTCTCCTAATTCTGCCACGCTGTCGGCCTGCTTCTTGCGGAGGGCAGCAGCGGTGGCCTCGTGCTGCAGAGTCGACTCTTCAAGGTCGCGGCGGAGCTTCTGTAACTCAGCTTCTCGTTTCTTGTTCATCTCAATCTGAGCCGAGGTTGCACCACCAGCCTCTTCAAGCCTTTCACTGATCTCCTCAAGCTCTCTTGCAAGATCAGACCTTTGCTTTTCGGTCTTTGCTCGGGAAGCACGCTCTG

Function

NR:

description
PREDICTED: myosin heavy chain, fast skeletal muscle

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU52774 True 371 lncRNA 0.51 2 21472716 21508824

Neighbor

gene id symbol gene type direction distance location
AMCG00013124 LOC103370545,LOC102292730,LOC777984,LOC100705928,LOC102793686,LOC100710639,LOC101481850,LOC102288653 coding upstream 23998 21421622 ~ 21448718 (+)
AMCG00013119 LOC106565367,LOC777984 coding upstream 72404 21399406 ~ 21400312 (+)
AMCG00013128 LOC106597527,LOC106569817,LOC106606262,LOC106596646,LOC106585883,LOC106596400 coding upstream 109803 21362315 ~ 21362913 (+)
AMCG00013121 NA coding upstream 113009 21350662 ~ 21359707 (+)
AMCG00013123 NA coding upstream 127653 21343864 ~ 21345063 (+)
AMCG00013127 NA coding downstream 36795 21545619 ~ 21547056 (+)
AMCG00013129 LOC107756562,LOC108433489,LOC107570719,LOC107695698 coding downstream 42348 21551172 ~ 21585017 (+)
AMCG00013146 dnah9 coding downstream 264418 21773242 ~ 21911741 (+)
AMCG00013148 NA coding downstream 421231 21930055 ~ 22228496 (+)
AMCG00013149 foxk2,LOC107719587,LOC106601484 coding downstream 767518 22276342 ~ 22292501 (+)
G42331 LOC100710639,LOC102784652,LOC102295130,LOC102192639,LOC101477534,LOC108412652 non-coding upstream 60727 21364104 ~ 21411989 (+)
G42330 LOC106589491,LOC105023009,LOC103368359,LOC100710639,LOC102784652,LOC102295130 non-coding upstream 168503 21256585 ~ 21304213 (+)
G42277 NA non-coding upstream 582384 20889675 ~ 20890332 (+)
G42269 NA non-coding upstream 632156 20839589 ~ 20840560 (+)
G42177 NA non-coding upstream 845382 20627094 ~ 20627334 (+)
G42350 NA non-coding downstream 19957 21528781 ~ 21600968 (+)
G42448 NA non-coding downstream 639470 22148294 ~ 22148513 (+)
G42449 NA non-coding downstream 640761 22149585 ~ 22149787 (+)
G42459 NA non-coding downstream 757533 22266357 ~ 22266636 (+)
G42464 wdr45b non-coding downstream 791749 22300573 ~ 22304742 (+)
AMCG00013118 LOC106594791 other upstream 1156 21286031 ~ 21471560 (+)
AMCG00013126 myhb,LOC108443910 other upstream 51400 21370843 ~ 21421316 (+)
G42326 LOC105030495,LOC106938339,LOC103143718,LOC103461378 other upstream 193988 21269675 ~ 21278728 (+)
G41978 NA other upstream 2443438 19025561 ~ 19029278 (+)
AMCG00013068 NA other upstream 2498354 18967429 ~ 18974362 (+)
G42453 NA other downstream 733605 22242429 ~ 22245790 (+)
AMCG00013147 NA other downstream 739673 22248497 ~ 22260816 (+)
AMCG00013198 NA other downstream 2732445 24241269 ~ 24331854 (+)
G42846 NA other downstream 3238668 24747492 ~ 24749395 (+)
G42858 NA other downstream 3259600 24768424 ~ 24770148 (+)

Expression


Co-expression Network