G42347


Basic Information

Item Value
gene id G42347
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 21498973 ~ 21503924 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU52776
cttaCTTCACTCCACTTGAGGAGTGATCTATTGCTGGATTTGgtttcaaaatattcaaaatatttttattgccTGGACATGTGTCAATTTGCAGATGATCCCTAAAGCCCCTAATAGTTCCTTGGTGTGGATGGTTAATGCCAAATATAGGGAAAAGTTCCGGTTACTTGCAagtgcttctgtttttattttgtgaaagccAATGTGTGAGTCTCATTCATTCTTTGCCAACCACCGTGGCAAGTCTGGGACTAGCTCAGCTTCATAATGTTATTTCTCATTTGAGCCTCAGTCGCTTAGAGCAGCTGGGAAAGTGAAACATATCTATTCAGATCAGCaatgaatgtctttttttttttaatatattagaaTTTgtcaatcttatttttttttttaaaggtttccatgaattaattttgttatttattttatttacaggtcTGTGGGGAAACGAACATTACCATTTAGACTACATATCAGGTGAAGTTCAAGGTGATGAGTTATCAAATGGCACCTTTCTTGCCAAGGATGGTGTGTCCTGGAGCTGTTGCAGCTCTCAGCTTGTTGACCTGGGATTCAGCGATGTCCGCACGCTCCTCGGCTTCCTCCAGCTCATGCTGCACCTTCCTGTACTTGGAGAGATGGGTGTTGGCTTGCTCATcctgaaaagattaaaaaatacaataggaCTCTTAATGAACAATGTGAACCCCTTGTACATGATGACTCCATTCTTAGTGTGATCATATGGCTccaattaatggacaccaagaCATTTTGAGAGTGGAGGAGAGAGTGGTTAATTTTCCCTTCATCTGAAAGACATTCACTTTGAATTCAATCTTGCacaatatactatattattGTTACCTAAATATCACATGCAAAGAACAGGAGAATGCCCAGATGCTCACTCTTGCTGCAACCAATTGGAAAGACTGAACAACTGATTTGATCTGGAGACTAGGTTTTATATGCAATGTATTCCTTAAAATTGATAAGATAAATGGTTGATTTTATGCATTCATaaccattaacaaaatatgtagtATGAATTAATACGTAACCAATGTTACATAAGCTTTTACTTCTTAATAATGCTGTGCAGTGAAATTAAGCAACAATGCACGATTCAACTGATTTATGTCTTTCAGTTTAAAGGCAATTGTACAATCCtgtcctgtctcaaagtgtcaTTATGGAGCCACATGGTCTATACTCTGGATGCCATTAAATTCACTGGAGCAATCAAGAAAGGCAACAGTGTCATAAAGACAAGCATTACTGTTTGATCTAGGTGGATAAATGCCTTTCCTTTCTGGACTGTTACTCTGCATTCAAAGATAATTATATATCCGAGGaattaaagtgaataataaatgttaataaatacagaatgcaaaaataaaagaactCACAGCTTCCTCAGCCTGTCTCTTGTAAGACTTCACTTTCAGCTGTAGCTTGTCAACCAGATCCTGGAGTCTAACAACG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU52776 True 1494 lncRNA 0.37 3 21498973 21503924

Neighbor

gene id symbol gene type direction distance location
AMCG00013125 LOC108412647 coding upstream 12280 21486231 ~ 21486693 (+)
AMCG00013142 LOC108412647 coding upstream 12295 21486231 ~ 21486678 (+)
AMCG00013120 myhz1.2,myhz1.1,myhc4 coding upstream 17693 21475618 ~ 21481280 (+)
AMCG00013140 wu:fd14a01 coding upstream 17693 21476260 ~ 21481280 (+)
AMCG00013124 LOC103370545,LOC102292730,LOC777984,LOC100705928,LOC102793686,LOC100710639,LOC101481850,LOC102288653 coding upstream 50255 21421622 ~ 21448718 (+)
AMCG00013127 NA coding downstream 41695 21545619 ~ 21547056 (+)
AMCG00013129 LOC107756562,LOC108433489,LOC107570719,LOC107695698 coding downstream 47248 21551172 ~ 21585017 (+)
AMCG00013146 dnah9 coding downstream 269318 21773242 ~ 21911741 (+)
AMCG00013148 NA coding downstream 426131 21930055 ~ 22228496 (+)
AMCG00013149 foxk2,LOC107719587,LOC106601484 coding downstream 772418 22276342 ~ 22292501 (+)
G42331 LOC100710639,LOC102784652,LOC102295130,LOC102192639,LOC101477534,LOC108412652 non-coding upstream 86984 21364104 ~ 21411989 (+)
G42330 LOC106589491,LOC105023009,LOC103368359,LOC100710639,LOC102784652,LOC102295130 non-coding upstream 194760 21256585 ~ 21304213 (+)
G42277 NA non-coding upstream 608641 20889675 ~ 20890332 (+)
G42269 NA non-coding upstream 658413 20839589 ~ 20840560 (+)
G42177 NA non-coding upstream 871639 20627094 ~ 20627334 (+)
G42350 NA non-coding downstream 24857 21528781 ~ 21600968 (+)
G42448 NA non-coding downstream 644370 22148294 ~ 22148513 (+)
G42449 NA non-coding downstream 645661 22149585 ~ 22149787 (+)
G42459 NA non-coding downstream 762433 22266357 ~ 22266636 (+)
G42464 wdr45b non-coding downstream 796649 22300573 ~ 22304742 (+)
G42344 LOC108412647 other upstream 12165 21426660 ~ 21486808 (+)
AMCG00013118 LOC106594791 other upstream 27413 21286031 ~ 21471560 (+)
AMCG00013126 myhb,LOC108443910 other upstream 77657 21370843 ~ 21421316 (+)
G42326 LOC105030495,LOC106938339,LOC103143718,LOC103461378 other upstream 220245 21269675 ~ 21278728 (+)
G41978 NA other upstream 2469695 19025561 ~ 19029278 (+)
G42453 NA other downstream 738505 22242429 ~ 22245790 (+)
AMCG00013147 NA other downstream 744573 22248497 ~ 22260816 (+)
AMCG00013198 NA other downstream 2737345 24241269 ~ 24331854 (+)
G42846 NA other downstream 3243568 24747492 ~ 24749395 (+)
G42858 NA other downstream 3264500 24768424 ~ 24770148 (+)

Expression


Co-expression Network