G42350


Basic Information

Item Value
gene id G42350
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 21528781 ~ 21600968 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU52783
tgaacaggtgttcctaataatcctttaggtgagtgtatatatatatataataaacacacacacacacacacaccgtacCAAACTGCTCCTGTAGTTGTGCGCATCATGTCCAGGAAGAAAAAGATAATATACAAGCACCTGGTAtcattatttgaaatacatttgtaagagTTTTAAAACTTggaggttttcttttaataatgcatacatTGCGATGCCTAACCATTTCAGATGCAGTTGTCTTGGTGTATATCTGGTCTTATAGTCAGTGTTCACCATTGCTCTAAATGAAGATCCATGGCAGAGTTCAAATTGAGGTCTGTAACATCCAAAAATTCTGCATTGAAGATACTGGGCCCAGCTGATGGGACAGACGTGTTAAAGCCAGTGGCGGAGCTGGGTGGGGTTAGATCCAGCCACTCCATCGTCTCCCATGGGGACTCGGTAAAGCTCAGGTTCAGGGCCTGGCCCTCTGTCGAAGGCGATACTCTGGCATTCATTGGTGACAGCGGAGTTTCCATTATATCGCGGCTGGTGAGCAGCTTTTCTTGATGGGGTCCCGGAAATCCATCCGCCGCTTCCTCCAGCTGAGATTCGTCATTCCCGATTTTGAGAAGAACAATTTCACTTGCTCTACTCATGGGACTGTTCAATAAGGCCTCCAGGTGATTGTCTCCACTGCTGGCTCCGTGTTCAAAGGGAAGCTGGGAGGGAGACAAGTGCTCGTAGTGCCTGTGGATTTTGGGTAGAGGCACGCTGGCGCTTCCTGAAGAAACTGTAATGTGAGGCACAACTTTTGTTACGCAAGGCCTCTCTTCTTTGGCATTAGCTGGCATTTCTGGAAACGCACAGAAGaagcacattttgtgttttaacacTGAGCACTTATTGTTACACTTcagcactgtttaaaatgtatatattcataaagtATGGCACATAGGACAAGATAAAAGGTGTGCCTTAAGTATCACAACCAACACTACcactttttaaaactttcatttttttgtttgttttgctgatgAGAATAAATCTGGATATGCTTAAGGAGTAAAAATACAGGGCATTACACATACTGTAAGCAATTGGGCAAGATGCCTTGGAGCCCAAATTGTTTTCAGTTATGAAGCAATAACTCAGAAGCCACAAGGTGATTTACAAAAGATATCTTAACCCTGAAAAATGTATCTGGAATATGTTAACACCCAAAAGGTTGTcttctttattatatatttgtcctCATTAATAATAGTCTTATCATAATTCTAAACAATGtacaatcaatatttttaaatgacagaaaaaacacaatgtttccGTGTGTGATCTTTATGTTCATTGCAGCACAACATGTTCGTTTTGTTGGCTATTATGACATTTTTGACACCTACTGCCTCATCCTAGttgaatttttaattttaattttaaatgaatggggataatacatataaattattaaatagagTTGtagtgtgttttgcttttaatttaaatacctttttaagtcaaagaacacaaattaatttatcAAGCAGTTCATGTAATATATTTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU52783 True 1555 lncRNA 0.39 2 21528781 21600968

Neighbor

gene id symbol gene type direction distance location
AMCG00013125 LOC108412647 coding upstream 42088 21486231 ~ 21486693 (+)
AMCG00013142 LOC108412647 coding upstream 42103 21486231 ~ 21486678 (+)
AMCG00013120 myhz1.2,myhz1.1,myhc4 coding upstream 47501 21475618 ~ 21481280 (+)
AMCG00013140 wu:fd14a01 coding upstream 47501 21476260 ~ 21481280 (+)
AMCG00013124 LOC103370545,LOC102292730,LOC777984,LOC100705928,LOC102793686,LOC100710639,LOC101481850,LOC102288653 coding upstream 80063 21421622 ~ 21448718 (+)
AMCG00013146 dnah9 coding downstream 172274 21773242 ~ 21911741 (+)
AMCG00013148 NA coding downstream 329087 21930055 ~ 22228496 (+)
AMCG00013149 foxk2,LOC107719587,LOC106601484 coding downstream 675374 22276342 ~ 22292501 (+)
AMCG00013152 NA coding downstream 778267 22379235 ~ 22470187 (+)
AMCG00013154 NA coding downstream 896425 22497393 ~ 22498928 (+)
G42345 LOC777982,LOC104957706 non-coding upstream 19957 21472716 ~ 21508824 (+)
G42347 NA non-coding upstream 24857 21498973 ~ 21503924 (+)
G42331 LOC100710639,LOC102784652,LOC102295130,LOC102192639,LOC101477534,LOC108412652 non-coding upstream 116792 21364104 ~ 21411989 (+)
G42330 LOC106589491,LOC105023009,LOC103368359,LOC100710639,LOC102784652,LOC102295130 non-coding upstream 224568 21256585 ~ 21304213 (+)
G42277 NA non-coding upstream 638449 20889675 ~ 20890332 (+)
G42448 NA non-coding downstream 547326 22148294 ~ 22148513 (+)
G42449 NA non-coding downstream 548617 22149585 ~ 22149787 (+)
G42459 NA non-coding downstream 665389 22266357 ~ 22266636 (+)
G42464 wdr45b non-coding downstream 699605 22300573 ~ 22304742 (+)
G42488 NA non-coding downstream 913896 22514864 ~ 22570081 (+)
G42344 LOC108412647 other upstream 41973 21426660 ~ 21486808 (+)
AMCG00013118 LOC106594791 other upstream 57221 21286031 ~ 21471560 (+)
AMCG00013126 myhb,LOC108443910 other upstream 107465 21370843 ~ 21421316 (+)
G42326 LOC105030495,LOC106938339,LOC103143718,LOC103461378 other upstream 250053 21269675 ~ 21278728 (+)
G41978 NA other upstream 2499503 19025561 ~ 19029278 (+)
G42453 NA other downstream 641461 22242429 ~ 22245790 (+)
AMCG00013147 NA other downstream 647529 22248497 ~ 22260816 (+)
AMCG00013198 NA other downstream 2640301 24241269 ~ 24331854 (+)
G42846 NA other downstream 3146524 24747492 ~ 24749395 (+)
G42858 NA other downstream 3167456 24768424 ~ 24770148 (+)

Expression


Co-expression Network