G42372 (LOC105910910,LOC103366176,LOC777984,LOC100705928)


Basic Information

Item Value
gene id G42372
gene name LOC105910910,LOC103366176,LOC777984,LOC100705928
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 21287320 ~ 21310348 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU52820
AATCTCTTCAGTGGAGAATCCGGCGCTGGAAAGACTGTGAACACGAAACGTGTCATCCAGTACTTTGCCACCATTGCAGTGTCATCTGACAAGAAGAAGGAGGCACAGCCTGGCAAAATACAGGGAACACTGGAGGATCAAATCATCTCAGCCAACCCTCTGCTGGAGGCTTTCGGTAATGCCAAGACAGTGAGGAATGACAACTCCTCTCGCTTTGGTAAATTCATCAGAATTCACTTTGGAACCACAGGAAAACTGGCTTCTGCTGACATTGAGACTTACTTGCTGGAGAAGTCCAGAGTAACATTCCAGCTGTCTGAAGAAAGGAGCTACCACATCTTTTATCAGATCATGACCAACCACAAGCCAGAGCTCATtgACATGCTTCTGATCACCACCAATCCCTATGACTTCCCTATGATCAGCCAGGGTCAGATCTCTGTGGCCAGCATTGATGACAAAGAGGAGCTGGTTGCCACAG

Function

NR:

description
PREDICTED: myosin heavy chain, fast skeletal muscle-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU52820 True 481 lncRNA 0.48 5 21287320 21310348

Neighbor

gene id symbol gene type direction distance location
AMCG00013117 NA coding downstream 8658 21270349 ~ 21278662 (-)
AMCG00013114 LOC102780693,LOC101068441,LOC108261437,LOC101079795 coding downstream 23838 21248082 ~ 21263482 (-)
AMCG00013106 gas7,LOC106589492 coding downstream 190901 21079606 ~ 21096419 (-)
AMCG00013102 rcvrn coding downstream 301435 20984036 ~ 20985885 (-)
AMCG00013103 LOC104927391,LOC101078514,LOC101475813,LOC100711440 coding downstream 433256 20841618 ~ 20854064 (-)
AMCG00013113 myhz1.1,ns:zf-e68,myhz1.2,LOC108444092,LOC105902796,LOC108254796,LOC108443910,LOC103370565 coding upstream 17852 21328200 ~ 21335131 (-)
AMCG00013110 LOC100705928,LOC102793686,LOC101481850,LOC100710639,LOC102197206,LOC102288653,LOC106589491 coding upstream 25809 21336157 ~ 21338083 (-)
AMCG00013116 ns:zf-e68,LOC106569812,LOC108254801,LOC108261476,LOC108261437,LOC106569813 coding upstream 40111 21350459 ~ 21350814 (-)
AMCG00013115 LOC108412647,LOC100705928,LOC102793686,LOC105910910 coding upstream 40915 21351263 ~ 21375164 (-)
AMCG00013138 LOC103399676,LOC107571695 coding upstream 83928 21394276 ~ 21398255 (-)
G42378 LOC106596905,LOC106577420,LOC106569812 non-coding downstream 77671 21209265 ~ 21209649 (-)
G42376 myhz1.2,myhz1.1,LOC108415768,LOC102780693,LOC105899468 non-coding downstream 91970 21194149 ~ 21195350 (-)
G42278 NA non-coding downstream 397032 20889683 ~ 20890288 (-)
G42242 NA non-coding downstream 613092 20666345 ~ 20674228 (-)
G42136 NA non-coding downstream 882235 20401708 ~ 20405085 (-)
G42382 NA non-coding upstream 30622 21340970 ~ 21427716 (-)
G42383 NA non-coding upstream 36127 21346475 ~ 21346834 (-)
G42386 NA non-coding upstream 89296 21399644 ~ 21400158 (-)
G42440 dnah9 non-coding upstream 583276 21893624 ~ 21905597 (-)
G42450 NA non-coding upstream 839233 22149581 ~ 22149792 (-)
AMCG00013090 NA other downstream 741509 20531194 ~ 20545811 (-)
G42076 NA other downstream 1304440 19980336 ~ 19982880 (-)
AMCG00013070 NA other downstream 2215902 19068245 ~ 19071418 (-)
AMCG00013071 rab37,LOC105012908,LOC106606976,LOC105901728,LOC108439461,LOC107746753,LOC107715539,LOC103393210,LOC108242943,LOC101475770,LOC108278300 other downstream 2264542 18977060 ~ 19022778 (-)
AMCG00013051 NA other downstream 3022477 18258089 ~ 18264843 (-)
G42371 myhc4,LOC108412647,LOC107723326,LOC108415768,LOC105910910 other upstream 25869 21336217 ~ 21517177 (-)
G42381 LOC102793686,LOC103366176,LOC105910910 other upstream 26719 21337067 ~ 21375763 (-)
G42375 LOC108261476,LOC105030495,LOC108261437,LOC108254801,LOC108254800,LOC108417520 other upstream 40312 21350660 ~ 21360107 (-)
AMCG00013137 myhm86-1,LOC107373462,LOC107574740,LOC103143810,LOC108243721,LOC106527115,LOC101079795,LOC108261476,LOC101068441,LOC101071797,LOC101163414 other upstream 101591 21411939 ~ 21422118 (-)
AMCG00013131 LOC101068441,LOC106598369,LOC106594844,LOC106593081,LOC106593408,LOC104955241 other upstream 137981 21448329 ~ 21449954 (-)

Expression


Co-expression Network