G42375 (LOC108261476,LOC105030495,LOC108261437,LOC108254801,LOC108254800,LOC108417520)


Basic Information

Item Value
gene id G42375
gene name LOC108261476,LOC105030495,LOC108261437,LOC108254801,LOC108254800,LOC108417520
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 21350660 ~ 21360107 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU52823
CTTATTAACACCAAGAAGAAGCTTGAGAGTGACATTGCTCAACTACAAGGTGAAGTTGATGACACCATCCAGGAAGCAAGAAATGCAGAAGAAAAGGCCAAGAAGGCAATTACTGATGCTGCTATGATGGCTGAGGAGCTGAAGAAGGAGCAGGACACCAGCTCTCACCTGGAGAGAATGAAGAAGAACCTGGAGGTCACAGTGAAGGACCTGCAGCACCGTCTGGATGAGGCTGAGCAGCTGGCAATGAAGGGTGGAAAGAAGCAGCTCCAGAAACTGGAGGCCAGGGTGCGTGAGCTGGAGGTCACAGTGAAGGACCTGCAGCACCGTCTGGATGAGGCTGAGCAGCTGGCAATGAAGGGTGGAAAGAAGCAGCTCCAGAAACT

Function

NR:

description
PREDICTED: myosin heavy chain, fast skeletal muscle-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU52823 True 386 TUCP 0.52 4 21350660 21360107

Neighbor

gene id symbol gene type direction distance location
AMCG00013110 LOC100705928,LOC102793686,LOC101481850,LOC100710639,LOC102197206,LOC102288653,LOC106589491 coding downstream 12577 21336157 ~ 21338083 (-)
AMCG00013113 myhz1.1,ns:zf-e68,myhz1.2,LOC108444092,LOC105902796,LOC108254796,LOC108443910,LOC103370565 coding downstream 15529 21328200 ~ 21335131 (-)
AMCG00013111 LOC100705928,LOC100710639,LOC102793686,LOC101481850,LOC108254796,LOC106589491,LOC102288653 coding downstream 61591 21287146 ~ 21289069 (-)
AMCG00013117 NA coding downstream 71998 21270349 ~ 21278662 (-)
AMCG00013114 LOC102780693,LOC101068441,LOC108261437,LOC101079795 coding downstream 87178 21248082 ~ 21263482 (-)
AMCG00013138 LOC103399676,LOC107571695 coding upstream 34169 21394276 ~ 21398255 (-)
AMCG00013136 LOC107571695,LOC108418072 coding upstream 91925 21452032 ~ 21454895 (-)
AMCG00013132 myhz1.1,ns:zf-e68,myhz1.2,myhz2,myhc4 coding upstream 108922 21469029 ~ 21474368 (-)
AMCG00013134 LOC105910910,LOC107723326,LOC103366176,LOC108412647,LOC100705928 coding upstream 128174 21488281 ~ 21492981 (-)
AMCG00013139 NA coding upstream 167166 21527273 ~ 21529046 (-)
G42383 NA non-coding downstream 3826 21346475 ~ 21346834 (-)
G42372 LOC105910910,LOC103366176,LOC777984,LOC100705928 non-coding downstream 40312 21287320 ~ 21310348 (-)
G42378 LOC106596905,LOC106577420,LOC106569812 non-coding downstream 141011 21209265 ~ 21209649 (-)
G42376 myhz1.2,myhz1.1,LOC108415768,LOC102780693,LOC105899468 non-coding downstream 155310 21194149 ~ 21195350 (-)
G42278 NA non-coding downstream 460372 20889683 ~ 20890288 (-)
G42386 NA non-coding upstream 39537 21399644 ~ 21400158 (-)
G42440 dnah9 non-coding upstream 533517 21893624 ~ 21905597 (-)
G42450 NA non-coding upstream 789474 22149581 ~ 22149792 (-)
G42544 NA non-coding upstream 1214451 22574558 ~ 22574827 (-)
G42553 NA non-coding upstream 1345959 22706066 ~ 22706337 (-)
AMCG00013112 myhb,LOC106527115,LOC107667337,LOC107721187,LOC108440470 other downstream 39354 21300093 ~ 21311306 (-)
G42366 myhz2,LOC106598369,LOC104955241 other downstream 49239 21252107 ~ 21301421 (-)
AMCG00013090 NA other downstream 804849 20531194 ~ 20545811 (-)
G42076 NA other downstream 1367780 19980336 ~ 19982880 (-)
AMCG00013070 NA other downstream 2279242 19068245 ~ 19071418 (-)
AMCG00013137 myhm86-1,LOC107373462,LOC107574740,LOC103143810,LOC108243721,LOC106527115,LOC101079795,LOC108261476,LOC101068441,LOC101071797,LOC101163414 other upstream 51832 21411939 ~ 21422118 (-)
AMCG00013131 LOC101068441,LOC106598369,LOC106594844,LOC106593081,LOC106593408,LOC104955241 other upstream 88222 21448329 ~ 21449954 (-)
AMCG00013133 wu:fd14a01,LOC101068441,LOC101079795,LOC103368359,LOC107721187 other upstream 143742 21503849 ~ 21526832 (-)
AMCG00013184 prkar1a,LOC107708993,LOC106606198 other upstream 2466502 23826609 ~ 23839146 (-)
G42749 NA other upstream 2483976 23844083 ~ 23847477 (-)

Expression


Co-expression Network