G42378 (LOC106596905,LOC106577420,LOC106569812)


Basic Information

Item Value
gene id G42378
gene name LOC106596905,LOC106577420,LOC106569812
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 21209265 ~ 21209649 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU52826
GGTGGGCCTCCTGAAGAGCTTTCTTCTCCTTTGTCAACTTGGAGATATTCTCATCAAGAGATGCCATCTCCTCAGTCAGATTTTTCACCTTGTTTTCTGTGGCATGTTTCTCCTTCTCCACTTTGGCCAGGGTGAGCTCTAAGTCATCAATGTCTTTCTTGAGCTCAGAGCACTCATCCTCCAGTTTCCTCTTCTTTGCAGTCAGCTCAGCATTCATTTCCTCCTCATCATCCAGTCTCTCTGCTGTCTCTTTCAATTTTGCCTCAAGCTGGATTTTACTCTTGATGAGGCCTTCACACCTTTCT

Function

NR:

description
PREDICTED: myosin heavy chain, fast skeletal muscle-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU52826 True 305 lncRNA 0.46 2 21209265 21209649

Neighbor

gene id symbol gene type direction distance location
AMCG00013106 gas7,LOC106589492 coding downstream 112846 21079606 ~ 21096419 (-)
AMCG00013102 rcvrn coding downstream 223380 20984036 ~ 20985885 (-)
AMCG00013103 LOC104927391,LOC101078514,LOC101475813,LOC100711440 coding downstream 355201 20841618 ~ 20854064 (-)
AMCG00013097 LOC103366163,LOC100708876,LOC103153053 coding downstream 449263 20747489 ~ 20760002 (-)
AMCG00013096 mprip,LOC105888873,LOC106589502 coding downstream 474996 20685271 ~ 20734269 (-)
AMCG00013114 LOC102780693,LOC101068441,LOC108261437,LOC101079795 coding upstream 38433 21248082 ~ 21263482 (-)
AMCG00013117 NA coding upstream 60700 21270349 ~ 21278662 (-)
AMCG00013111 LOC100705928,LOC100710639,LOC102793686,LOC101481850,LOC108254796,LOC106589491,LOC102288653 coding upstream 77497 21287146 ~ 21289069 (-)
AMCG00013113 myhz1.1,ns:zf-e68,myhz1.2,LOC108444092,LOC105902796,LOC108254796,LOC108443910,LOC103370565 coding upstream 118551 21328200 ~ 21335131 (-)
AMCG00013110 LOC100705928,LOC102793686,LOC101481850,LOC100710639,LOC102197206,LOC102288653,LOC106589491 coding upstream 126508 21336157 ~ 21338083 (-)
G42376 myhz1.2,myhz1.1,LOC108415768,LOC102780693,LOC105899468 non-coding downstream 13915 21194149 ~ 21195350 (-)
G42278 NA non-coding downstream 318977 20889683 ~ 20890288 (-)
G42242 NA non-coding downstream 535037 20666345 ~ 20674228 (-)
G42136 NA non-coding downstream 804180 20401708 ~ 20405085 (-)
G42078 NA non-coding downstream 1221530 19986243 ~ 19987735 (-)
G42372 LOC105910910,LOC103366176,LOC777984,LOC100705928 non-coding upstream 77671 21287320 ~ 21310348 (-)
G42382 NA non-coding upstream 131321 21340970 ~ 21427716 (-)
G42383 NA non-coding upstream 136826 21346475 ~ 21346834 (-)
G42386 NA non-coding upstream 189995 21399644 ~ 21400158 (-)
G42440 dnah9 non-coding upstream 683975 21893624 ~ 21905597 (-)
AMCG00013090 NA other downstream 663454 20531194 ~ 20545811 (-)
G42076 NA other downstream 1226385 19980336 ~ 19982880 (-)
AMCG00013070 NA other downstream 2137847 19068245 ~ 19071418 (-)
AMCG00013071 rab37,LOC105012908,LOC106606976,LOC105901728,LOC108439461,LOC107746753,LOC107715539,LOC103393210,LOC108242943,LOC101475770,LOC108278300 other downstream 2186487 18977060 ~ 19022778 (-)
AMCG00013051 NA other downstream 2944422 18258089 ~ 18264843 (-)
G42366 myhz2,LOC106598369,LOC104955241 other upstream 42458 21252107 ~ 21301421 (-)
AMCG00013112 myhb,LOC106527115,LOC107667337,LOC107721187,LOC108440470 other upstream 90444 21300093 ~ 21311306 (-)
G42371 myhc4,LOC108412647,LOC107723326,LOC108415768,LOC105910910 other upstream 126568 21336217 ~ 21517177 (-)
G42381 LOC102793686,LOC103366176,LOC105910910 other upstream 127418 21337067 ~ 21375763 (-)
G42375 LOC108261476,LOC105030495,LOC108261437,LOC108254801,LOC108254800,LOC108417520 other upstream 141011 21350660 ~ 21360107 (-)

Expression


Co-expression Network