G42386


Basic Information

Item Value
gene id G42386
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 21399644 ~ 21400158 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU52834
TCAGGACGGACTGGTTCTCACGATctgtaaatacatCAGTGAGCATGTTCTGATAGGCATTATCAGAGACAGAGAAGATGTGTGGTGGAGCCTCCATGCGCTTTTTGCCTCTGTAGGCTGTCACAACTGATTGATCATACACTGGCAGCCACTTGTAGGGGTTCACAGTTGCACAAAACAGCCCAGAGTAGGTCAAATCATCCATGCTGCGTAACGCTCTTTGAGGTTATACAGCACAGAGGCTTCATTCAGGTGGGTCATCATCGCCATGTCCTCAATTTTGTCGTACTTGGGAGGATTCATTGGGAAGACGTCATCCTCCTTGACTGTGACAGTCTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU52834 True 339 lncRNA 0.48 3 21399644 21400158

Neighbor

gene id symbol gene type direction distance location
AMCG00013138 LOC103399676,LOC107571695 coding downstream 1389 21394276 ~ 21398255 (-)
AMCG00013115 LOC108412647,LOC100705928,LOC102793686,LOC105910910 coding downstream 24480 21351263 ~ 21375164 (-)
AMCG00013116 ns:zf-e68,LOC106569812,LOC108254801,LOC108261476,LOC108261437,LOC106569813 coding downstream 48830 21350459 ~ 21350814 (-)
AMCG00013110 LOC100705928,LOC102793686,LOC101481850,LOC100710639,LOC102197206,LOC102288653,LOC106589491 coding downstream 61561 21336157 ~ 21338083 (-)
AMCG00013113 myhz1.1,ns:zf-e68,myhz1.2,LOC108444092,LOC105902796,LOC108254796,LOC108443910,LOC103370565 coding downstream 64513 21328200 ~ 21335131 (-)
AMCG00013136 LOC107571695,LOC108418072 coding upstream 51874 21452032 ~ 21454895 (-)
AMCG00013132 myhz1.1,ns:zf-e68,myhz1.2,myhz2,myhc4 coding upstream 68871 21469029 ~ 21474368 (-)
AMCG00013134 LOC105910910,LOC107723326,LOC103366176,LOC108412647,LOC100705928 coding upstream 88123 21488281 ~ 21492981 (-)
AMCG00013139 NA coding upstream 127115 21527273 ~ 21529046 (-)
AMCG00013143 NA coding upstream 129255 21529413 ~ 21531624 (-)
G42383 NA non-coding downstream 52810 21346475 ~ 21346834 (-)
G42372 LOC105910910,LOC103366176,LOC777984,LOC100705928 non-coding downstream 89296 21287320 ~ 21310348 (-)
G42378 LOC106596905,LOC106577420,LOC106569812 non-coding downstream 189995 21209265 ~ 21209649 (-)
G42376 myhz1.2,myhz1.1,LOC108415768,LOC102780693,LOC105899468 non-coding downstream 204294 21194149 ~ 21195350 (-)
G42278 NA non-coding downstream 509356 20889683 ~ 20890288 (-)
G42440 dnah9 non-coding upstream 493466 21893624 ~ 21905597 (-)
G42450 NA non-coding upstream 749423 22149581 ~ 22149792 (-)
G42544 NA non-coding upstream 1174400 22574558 ~ 22574827 (-)
G42553 NA non-coding upstream 1305908 22706066 ~ 22706337 (-)
G42557 NA non-coding upstream 1415998 22816156 ~ 22816369 (-)
G42381 LOC102793686,LOC103366176,LOC105910910 other downstream 23881 21337067 ~ 21375763 (-)
G42375 LOC108261476,LOC105030495,LOC108261437,LOC108254801,LOC108254800,LOC108417520 other downstream 39537 21350660 ~ 21360107 (-)
AMCG00013112 myhb,LOC106527115,LOC107667337,LOC107721187,LOC108440470 other downstream 88338 21300093 ~ 21311306 (-)
G42366 myhz2,LOC106598369,LOC104955241 other downstream 98223 21252107 ~ 21301421 (-)
AMCG00013090 NA other downstream 853833 20531194 ~ 20545811 (-)
AMCG00013137 myhm86-1,LOC107373462,LOC107574740,LOC103143810,LOC108243721,LOC106527115,LOC101079795,LOC108261476,LOC101068441,LOC101071797,LOC101163414 other upstream 11781 21411939 ~ 21422118 (-)
AMCG00013131 LOC101068441,LOC106598369,LOC106594844,LOC106593081,LOC106593408,LOC104955241 other upstream 48171 21448329 ~ 21449954 (-)
AMCG00013133 wu:fd14a01,LOC101068441,LOC101079795,LOC103368359,LOC107721187 other upstream 103691 21503849 ~ 21526832 (-)
AMCG00013184 prkar1a,LOC107708993,LOC106606198 other upstream 2426451 23826609 ~ 23839146 (-)
G42749 NA other upstream 2443925 23844083 ~ 23847477 (-)

Expression


Co-expression Network