G42448


Basic Information

Item Value
gene id G42448
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 22148294 ~ 22148513 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU52917
tgcatcaatgagccttggccgcccatgaccctgtcgccggttcaccgcttttccttccttggaccacttttgataggtactgaccactgcagaccgggaacaccccacaagagctgcagttttggagatgctctgacccagtcgtctagccatcacaatttggcccttgtcaaagtcgctcagatccttacgcttgcccatttttcctgcttctaacaca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU52917 True 220 lncRNA 0.53 1 22148294 22148513

Neighbor

gene id symbol gene type direction distance location
AMCG00013146 dnah9 coding upstream 236553 21773242 ~ 21911741 (+)
AMCG00013129 LOC107756562,LOC108433489,LOC107570719,LOC107695698 coding upstream 563277 21551172 ~ 21585017 (+)
AMCG00013127 NA coding upstream 601238 21545619 ~ 21547056 (+)
AMCG00013125 LOC108412647 coding upstream 661601 21486231 ~ 21486693 (+)
AMCG00013142 LOC108412647 coding upstream 661616 21486231 ~ 21486678 (+)
AMCG00013149 foxk2,LOC107719587,LOC106601484 coding downstream 127829 22276342 ~ 22292501 (+)
AMCG00013152 NA coding downstream 230722 22379235 ~ 22470187 (+)
AMCG00013154 NA coding downstream 348880 22497393 ~ 22498928 (+)
AMCG00013155 LOC108443565,LOC103481883 coding downstream 364316 22512829 ~ 22514649 (+)
AMCG00013158 NA coding downstream 500663 22649176 ~ 22655621 (+)
G42350 NA non-coding upstream 547326 21528781 ~ 21600968 (+)
G42345 LOC777982,LOC104957706 non-coding upstream 639470 21472716 ~ 21508824 (+)
G42347 NA non-coding upstream 644370 21498973 ~ 21503924 (+)
G42331 LOC100710639,LOC102784652,LOC102295130,LOC102192639,LOC101477534,LOC108412652 non-coding upstream 736305 21364104 ~ 21411989 (+)
G42330 LOC106589491,LOC105023009,LOC103368359,LOC100710639,LOC102784652,LOC102295130 non-coding upstream 844081 21256585 ~ 21304213 (+)
G42449 NA non-coding downstream 1072 22149585 ~ 22149787 (+)
G42459 NA non-coding downstream 117844 22266357 ~ 22266636 (+)
G42464 wdr45b non-coding downstream 152060 22300573 ~ 22304742 (+)
G42488 NA non-coding downstream 366351 22514864 ~ 22570081 (+)
G42518 NA non-coding downstream 543419 22691932 ~ 22692216 (+)
G42344 LOC108412647 other upstream 661486 21426660 ~ 21486808 (+)
AMCG00013118 LOC106594791 other upstream 676734 21286031 ~ 21471560 (+)
AMCG00013126 myhb,LOC108443910 other upstream 726978 21370843 ~ 21421316 (+)
G42326 LOC105030495,LOC106938339,LOC103143718,LOC103461378 other upstream 869566 21269675 ~ 21278728 (+)
G41978 NA other upstream 3119016 19025561 ~ 19029278 (+)
G42453 NA other downstream 93916 22242429 ~ 22245790 (+)
AMCG00013147 NA other downstream 99984 22248497 ~ 22260816 (+)
AMCG00013198 NA other downstream 2092756 24241269 ~ 24331854 (+)
G42846 NA other downstream 2598979 24747492 ~ 24749395 (+)
G42858 NA other downstream 2619911 24768424 ~ 24770148 (+)

Expression


Co-expression Network