G42453


Basic Information

Item Value
gene id G42453
gene name NA
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 22242429 ~ 22245790 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU52922
CAGAAACTGAATCCCTCCTCACTTTCAAGATAAACATCTCAAGGTGCTCATCAATCCTGCTGCTCAGCAATACAGGCAGGCTGGGAGGGAGATGCAGAGAGTGGGGAGGGCTTTCGTTATTGGCAAATCACTTGAAGCCCACTGGGCTTGAGGATACACAACAGCGCCTTGATAAGCAGATCAAGAGGCTGTAAGGAGGAGGTGGGCGAAATAATCCATCTCCAGACCATGAAGCAGGATCTCTTCCTTCAGGCAATGACTAGGATTCCTTCCAGGCTGCACAAGGAAGCTGTCGTCTGTCAGATGGAGGATTAAATGCAACAGCACAGGAATACAAAGCTAAGAAGTTTCATCACTGCTGTATTTGCTTGATTCTCTTTGAGCCGTGAAATGGAAAGCCAGGCGACCGAAGTGAGCACGGAGAACATTGCTCTCGGGGAACGTTCCCGTTCGGAATCCAATGACTTTCTGACCTTCCAGACGGAGAGCACTGTCTTCAGCCTGTCCCGGAGCGAGTCCCTCTGGACCACAGAGTCCCGCAGTGCCTGGGAGACCTACCGGAAGCCCATCATCGTCATGTCCGCTGGCGGCGCCATATTCGTTTGTGGAATAATCCTGAGCAGCATGTATTTCATAGACTATTATAAAAAAGCCACCAACATCCTGGGCCCAGCATTCTTGTCCCTTGGCCTTATGATCCTAGTGGTTGGACTGGTGTGGGTCCCCATCAttaaggagaaaagaaaacaatcttcaGTCAAAAGGCTTTTTAGCTATTACAGGCCTCCATTTTTTCACTTATGAGGCACCTGCTTGCTTTAAACTTGAGAGTGGAAGTGGAGTTCCTTGCATATTCTACCAGAGATTCACTGTCCCTAATTGGAATGCTAGGAATCTGTCAAGAAAGTTGGGCTGCTGAGAAAAAGACACTACAGAAAACTGACATGGCTGGTTGACATTTCCAAGAGCTGTATAATATGCCTTGCTTGTTGTATTTAAGGTCTGAAATGTAATAATCAAGTCATTACCtttaagattaaaatatgaacattatGGTATTCGGAAAACAACAGCACCCTTATTAGTACTGAGCTGAGAGGGGAACGTGTGGTGAACTTGTTTTTGAAGATATCATCCTTGAAAGACGCCTATGCAATCCCTGTGGACATATCGCTGCGGAGGCCTTATCTGAAACAAACATGGGAGAGTAAATCTGAAGTATAAATGTTGTGATTGTGGAGCTCAGAATAGACATATGAAAATGATAGAGATAATATTGTGCAGTCACATGAATGGCATGAATCTTTGAAGATCCACATGTTACTGTTCATTGCGTACAAATACTGAGGGAGTGAAGATTTGAATGTCTGACCAAAAAGGGTTAGGCGCTGTGGTTGGCTTTGCAATGatcttgttttaaatgctgaaCACATTTATCCATTACCTAAACTCCCCCTTGATAAACCTTTATCCTGTCCCTGACACAAATGTACAATTTCAGAGTgtgctaaatgtttttttttttttttttttttttaatgtagagaaatatttcacaatgtttttggttattttaacacaatcaAAGCAAATGTGTGGCATAATTACCATAAaccaaatttcaaataaaaaaccCAACCTG

Function

NR:

description
PREDICTED: plasma membrane calcium-transporting ATPase 1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU52922 True 1642 TUCP 0.43 2 22242429 22245790

Neighbor

gene id symbol gene type direction distance location
AMCG00013148 NA coding upstream 13933 21930055 ~ 22228496 (+)
AMCG00013146 dnah9 coding upstream 330688 21773242 ~ 21911741 (+)
AMCG00013129 LOC107756562,LOC108433489,LOC107570719,LOC107695698 coding upstream 657412 21551172 ~ 21585017 (+)
AMCG00013127 NA coding upstream 695373 21545619 ~ 21547056 (+)
AMCG00013125 LOC108412647 coding upstream 755736 21486231 ~ 21486693 (+)
AMCG00013149 foxk2,LOC107719587,LOC106601484 coding downstream 30552 22276342 ~ 22292501 (+)
AMCG00013152 NA coding downstream 133445 22379235 ~ 22470187 (+)
AMCG00013154 NA coding downstream 251603 22497393 ~ 22498928 (+)
AMCG00013155 LOC108443565,LOC103481883 coding downstream 267039 22512829 ~ 22514649 (+)
AMCG00013158 NA coding downstream 403386 22649176 ~ 22655621 (+)
G42449 NA non-coding upstream 92642 22149585 ~ 22149787 (+)
G42448 NA non-coding upstream 93916 22148294 ~ 22148513 (+)
G42350 NA non-coding upstream 641461 21528781 ~ 21600968 (+)
G42345 LOC777982,LOC104957706 non-coding upstream 733605 21472716 ~ 21508824 (+)
G42347 NA non-coding upstream 738505 21498973 ~ 21503924 (+)
G42459 NA non-coding downstream 20567 22266357 ~ 22266636 (+)
G42464 wdr45b non-coding downstream 54783 22300573 ~ 22304742 (+)
G42488 NA non-coding downstream 269074 22514864 ~ 22570081 (+)
G42518 NA non-coding downstream 446142 22691932 ~ 22692216 (+)
G42554 NA non-coding downstream 616025 22861815 ~ 22862982 (+)
G42344 LOC108412647 other upstream 755621 21426660 ~ 21486808 (+)
AMCG00013118 LOC106594791 other upstream 770869 21286031 ~ 21471560 (+)
AMCG00013126 myhb,LOC108443910 other upstream 821113 21370843 ~ 21421316 (+)
G42326 LOC105030495,LOC106938339,LOC103143718,LOC103461378 other upstream 963701 21269675 ~ 21278728 (+)
G41978 NA other upstream 3213151 19025561 ~ 19029278 (+)
AMCG00013147 NA other downstream 2707 22248497 ~ 22260816 (+)
AMCG00013198 NA other downstream 1995479 24241269 ~ 24331854 (+)
G42846 NA other downstream 2501702 24747492 ~ 24749395 (+)
G42858 NA other downstream 2522634 24768424 ~ 24770148 (+)
AMCG00013236 NA other downstream 3267563 25513353 ~ 25521681 (+)

Expression


Co-expression Network