G42459


Basic Information

Item Value
gene id G42459
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 22266357 ~ 22266636 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU52939
aaaatattgaaaagaaagtcCCCAGAACCATTTTAGGTCCAATTGATAGAAGAAAGGTGTCCCCTTCTAAAGTAAAATAGTGTTATCCTGGGGAACAATTTATTTGAACTGGTCTTTCTCACCCAAATTGTTGTCCCCTATGCCACACATTTGTGTCTTAAATTGCATTAGGGGTCCTCTGCCTCTACCTCTACAAGGTAGTAACGCACCCCTCAAAGTATGCAGAAGACCCCCCTGGCCACAAACTAGATGAGGAGATGGTTATCGTGTAGCTGAAAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU52939 True 280 lncRNA 0.42 1 22266357 22266636

Neighbor

gene id symbol gene type direction distance location
AMCG00013148 NA coding upstream 37861 21930055 ~ 22228496 (+)
AMCG00013146 dnah9 coding upstream 354616 21773242 ~ 21911741 (+)
AMCG00013129 LOC107756562,LOC108433489,LOC107570719,LOC107695698 coding upstream 681340 21551172 ~ 21585017 (+)
AMCG00013127 NA coding upstream 719301 21545619 ~ 21547056 (+)
AMCG00013125 LOC108412647 coding upstream 779664 21486231 ~ 21486693 (+)
AMCG00013149 foxk2,LOC107719587,LOC106601484 coding downstream 9706 22276342 ~ 22292501 (+)
AMCG00013152 NA coding downstream 112599 22379235 ~ 22470187 (+)
AMCG00013154 NA coding downstream 230757 22497393 ~ 22498928 (+)
AMCG00013155 LOC108443565,LOC103481883 coding downstream 246193 22512829 ~ 22514649 (+)
AMCG00013158 NA coding downstream 382540 22649176 ~ 22655621 (+)
G42449 NA non-coding upstream 116570 22149585 ~ 22149787 (+)
G42448 NA non-coding upstream 117844 22148294 ~ 22148513 (+)
G42350 NA non-coding upstream 665389 21528781 ~ 21600968 (+)
G42345 LOC777982,LOC104957706 non-coding upstream 757533 21472716 ~ 21508824 (+)
G42347 NA non-coding upstream 762433 21498973 ~ 21503924 (+)
G42464 wdr45b non-coding downstream 33937 22300573 ~ 22304742 (+)
G42488 NA non-coding downstream 248228 22514864 ~ 22570081 (+)
G42518 NA non-coding downstream 425296 22691932 ~ 22692216 (+)
G42554 NA non-coding downstream 595179 22861815 ~ 22862982 (+)
G42619 NA non-coding downstream 1288036 23554672 ~ 23560660 (+)
AMCG00013147 NA other upstream 5541 22248497 ~ 22260816 (+)
G42453 NA other upstream 20567 22242429 ~ 22245790 (+)
G42344 LOC108412647 other upstream 779549 21426660 ~ 21486808 (+)
AMCG00013118 LOC106594791 other upstream 794797 21286031 ~ 21471560 (+)
AMCG00013126 myhb,LOC108443910 other upstream 845041 21370843 ~ 21421316 (+)
AMCG00013198 NA other downstream 1974633 24241269 ~ 24331854 (+)
G42846 NA other downstream 2480856 24747492 ~ 24749395 (+)
G42858 NA other downstream 2501788 24768424 ~ 24770148 (+)
AMCG00013236 NA other downstream 3246717 25513353 ~ 25521681 (+)
AMCG00013248 NA other downstream 3526769 25793405 ~ 25798013 (+)

Expression


Co-expression Network