G42464 (wdr45b)


Basic Information

Item Value
gene id G42464
gene name wdr45b
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 22300573 ~ 22304742 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU52945
CTTTACATTGCATATAACACACATACGTGTCCTAATTTATAgctcaaaaaatgaaaagttttaTTATAAGTGTTATATGATTTCTGAGCCGATGACTGGGAGAGGATGCTGGCTGAATCCAGACATAACGGGGATGCTTGAGTTGATCAATATACCCTGTGGTGCTGAGCCTTTGTGGCAGAAATAACGGTGAAGAAAGGGAAGGGATTGTCATGCTGACAGGGCGTGAAGCATACTTTTTCCGAGGCTGTGGCTATCCGCGTGCCTTGCAGGTTGAGCGCGATGCAGCTTAGCGCTCCTTCGTGGGCCGGGATGTCCACTGGTGGCTTCTCTGTGTTGGCCAGGTCCACTATCTGCACATGGCCAGTGTGGGTGCCGGGAAAGGCTAACAGGGAGTTATTGCTGTTGGGACATAATACACAAAGACCTTTGGGGTTGTAGCAAGTCTCAAACACATGCAGTTGATGAGGGTTGTGGGTAAAGGTGAAGACTTTTATCATGGAATCAAGAACCACCACAATCCGATCTCGCCGAAGTTTTACTGCTTTGACTTCTGTGGAAAACTCTATTTCTATGACCGTCTTCTTCTTCAGATCGTCCCAGATCATCACTTTATTAGGAGGATATTTTGGCTTCTTTCCACCTCCAACAAGAGCTAAGTAGTTACACCTGAACAGCATCTCCACGTGACCAACTCCACCCTCGAGAAACTCTGAAACGACACAAGAGAGCACGTAAGAGTTTAATTGCAGAAAGGAGACACACTAAACGGAGATTACTTGTTAACCCTTCacgacacacatacacaataatcACACCTTATGACAAGTGTCTCAACCAACAGAGGGGACGGACAGACAAGTTCAATTAGacttttcacaaaaacaaggaCAGAAGCATTTTCTTACAATCTTTATCTTGCCTTTCGATACATCAGTGCTAAAACAATCCGCTACATTCTATATTACAAACAAGGTGCACTATGGAAGTCTATCACAAGTTGCTTATATGAAGCATTtgcaggaaaataaacaggGTTGAAAAACAGTTTGGAGCTGGAATTGGGCAACTCTCTTCCTGGAAAGCGGGGGTCTTGCAGGGTTTATATGTGCATACTTTTATAGCTCTAATCTTTAATCACTAAACAGTTTTGAGCACAGAAAGTCTGACCTGTTTAGCACTGAGTTACAGATTATGGTTTTGGAGTGGggctaaaacaaacaaagaagggCTGCCAACTTGTTAAAGCATATAAACTGGCACAGGCCACTCCCAGTAAAGAACAAGATAATGTGTTAATAAGTTACCTGTGCAATGCATATGGAGctattaatgaaaaacacttgcATAGCCTGTAtacctattattattgttattatttttatttttttacacattgcATCTGAGTGCATGGAAGTCCCCTAAACTATAAGTCTCTGTTTTTGCACATCTCCATTTACCATCCCTGGAATTTCTGACTCTAGATCAACCTCCACATGTTGTTCCAAACAATGGAAGAAAAAGATAATTCAAAGCTAGTTAAGATCATGTGTGCATTggtcatacacacacacatacacatttctttTCCATTGGGAATGAAAAACCTTGTTACTGTTCTGGTTTTCCTGTCCAGACCAGATCGCACAAGATAGAGGAAGGAAATACCTTGGGTCTTGTTGTCACAACATTGTGGTCC

Function

symbol description
wdr45b Predicted to enable phosphatidylinositol-3,5-bisphosphate binding activity and phosphatidylinositol-3-phosphate binding activity. Predicted to be involved in several processes, including autophagy of mitochondrion; autophagy of nucleus; and protein localization to phagophore assembly site. Predicted to act upstream of or within autophagy. Predicted to be located in lysosome and phagophore assembly site. Predicted to be active in cytosol and phagophore assembly site membrane. Predicted to be extrinsic component of membrane. Orthologous to human WDR45B (WD repeat domain 45B).

NR:

description
PREDICTED: WD repeat domain phosphoinositide-interacting protein 3 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU52945 True 1699 lncRNA 0.42 4 22300573 22304742

Neighbor

gene id symbol gene type direction distance location
AMCG00013149 foxk2,LOC107719587,LOC106601484 coding upstream 8072 22276342 ~ 22292501 (+)
AMCG00013148 NA coding upstream 72077 21930055 ~ 22228496 (+)
AMCG00013146 dnah9 coding upstream 388832 21773242 ~ 21911741 (+)
AMCG00013129 LOC107756562,LOC108433489,LOC107570719,LOC107695698 coding upstream 715556 21551172 ~ 21585017 (+)
AMCG00013127 NA coding upstream 753517 21545619 ~ 21547056 (+)
AMCG00013152 NA coding downstream 74493 22379235 ~ 22470187 (+)
AMCG00013154 NA coding downstream 192651 22497393 ~ 22498928 (+)
AMCG00013155 LOC108443565,LOC103481883 coding downstream 208087 22512829 ~ 22514649 (+)
AMCG00013158 NA coding downstream 344434 22649176 ~ 22655621 (+)
AMCG00013161 LOC107722232 coding downstream 368460 22673202 ~ 22858651 (+)
G42459 NA non-coding upstream 33937 22266357 ~ 22266636 (+)
G42449 NA non-coding upstream 150786 22149585 ~ 22149787 (+)
G42448 NA non-coding upstream 152060 22148294 ~ 22148513 (+)
G42350 NA non-coding upstream 699605 21528781 ~ 21600968 (+)
G42345 LOC777982,LOC104957706 non-coding upstream 791749 21472716 ~ 21508824 (+)
G42488 NA non-coding downstream 210122 22514864 ~ 22570081 (+)
G42518 NA non-coding downstream 387190 22691932 ~ 22692216 (+)
G42554 NA non-coding downstream 557073 22861815 ~ 22862982 (+)
G42619 NA non-coding downstream 1249930 23554672 ~ 23560660 (+)
G42705 NA non-coding downstream 1479666 23784408 ~ 23831400 (+)
AMCG00013147 NA other upstream 39757 22248497 ~ 22260816 (+)
G42453 NA other upstream 54783 22242429 ~ 22245790 (+)
G42344 LOC108412647 other upstream 813765 21426660 ~ 21486808 (+)
AMCG00013118 LOC106594791 other upstream 829013 21286031 ~ 21471560 (+)
AMCG00013198 NA other downstream 1936527 24241269 ~ 24331854 (+)
G42846 NA other downstream 2442750 24747492 ~ 24749395 (+)
G42858 NA other downstream 2463682 24768424 ~ 24770148 (+)
AMCG00013236 NA other downstream 3208611 25513353 ~ 25521681 (+)
AMCG00013248 NA other downstream 3488663 25793405 ~ 25798013 (+)

Expression


Co-expression Network