G42488


Basic Information

Item Value
gene id G42488
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 22514864 ~ 22570081 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU52982
tGGAACTTACCATTTTCAACTGCCCTGAACACCCTCCCCACCACCAACACAACGACCACCACCTCTCCCACTTTCCTGGTTGTCTCGTTCTAAGGATGCCTTGCCTTTCTGTTCCCCCATCTCTCTGTTTTATACATATTACCTGGACTGAGAACTGCtgtagcattttattattatttttgtttcccctcttttcattttatttgggaCTGCTGCTTCACAAGTACTTATCCTACCTGCCACGTTATTATGCTTGTTCTATACCTGTGAAGAGGTCTGCCATTTGGAGTAACCCCTTCACTGATTCAGAAGCTTAAGTGTACATTGTCTTTATAAGTGTGACCTCTATTTTCAGATGTTAATTGATTATCCCCCCCAGTAATTACAGTGCATAATTTTGagattgtttattattattattttggtttttttaGTTTTCGATGTtgttcttattgtattttagttCTACTGGTGATCTCTGTCCCTTGTCTTATTAAGTGTTAAACATAGCTACATAACATTCAGTTTTTTCTACAcgtgcttgtttgtttcagacCGAGAGTCTAGCTCTCTTACTTCTCCATACCTTTGGATAGAGGAATACTTTAAAAAGAACACAAAgaggtgtttttctttgtctgtttgttagtttgtttttttcggCACTGTCAGTACATGAAGCAATAATCCTATCGTATGCTACGACATGCTGCTTGGATAATTCTTgtagacattaaaaaaaactccctTCACAAGACTTTTCCATGTCGCTAACAGAACCAACAAGTCAGTGATGTATAGCATGATCATGCTCAGTATTAATTTGGAGAGTACTGCTGGTGTGGTGAGAGATGTTCCAAATCTCTAAATACTACTTTTGCTCCGTAAACGGGAGTCTTTTCTTCAAGAACCTGTGCACTGTTGCGTGTTTTACAATCTAAACTGGTGCAATGTTACTACTATGTTCAAATCAAATCTGCTTGATTTTAATGTTGGTTTAGCTTTCAACTAAACTATCTTTGAAATACtcagatattgttttattattattaatattactattattattattatgacaacAATGATGATCAAAATATTTTGGCAtgatttctgtttaaatacacaaatctcaagcaaataagaataaaaaaaacatttgcaatccAGTTAATTCTTCACCATTTATTTCTGAGCATGATTAATTAGAACAATcagcttaaaaatatattttgtcttttttttttgtagctatGTATTTGCCTTCTTTTTAGATGGTTGTAAGATGAATGTAACAGATGTATAATGTAAAGGTGGATGGTGTTGTCCTATACTGTGGTTAATCCAAtcaatttattaatgtttactacagaccaaaagagaaaaaatatataataattataaaagagTTTTAATGTTTATACAAAGCAAGTCTATAGGTTGTTTTTGTACGGTATTTTTCCTATACAAATActgacaatgtattttaaaaggcacaattcaaatatacacacacacatatatatatatatatatatatatatatacacacacacacatatatacatatataaatatatatacacaaacacacacctataGGTCACTAAGTGCTTATAGTAACTGTGAATGACACAatgaagcatggaaagatgtatgctttaaataacaagaagagttagaaaaataaattaatggatcagagaaaaaaacgaaaatatgtgacatcactgaaagagtgaaaatgggtcggacacattgcaagaacagatgaaagatggacaaaagaggCTATCGAATGGATTCCAAGAGATgtaaaaagacctagaagatcaTCACATAagagatgggaagatgaaatgatAAACTTTGTTGctggtgtgacatggaaaagagatgctgtataTCAAAACAAGAGGAAACATCATGGAGAggcctttatccagcagtggatcaata

Function

GO:

id name namespace
GO:0097458 obsolete neuron part cellular_component
GO:0001917 photoreceptor inner segment cellular_component

KEGG:

id description
ko04727 GABAergic synapse
ko04744 Phototransduction

RNA

RNA id representative length rna type GC content exon number start site end site
TU52982 True 1956 lncRNA 0.33 2 22514864 22570081

Neighbor

gene id symbol gene type direction distance location
AMCG00013155 LOC108443565,LOC103481883 coding upstream 215 22512829 ~ 22514649 (+)
AMCG00013154 NA coding upstream 15936 22497393 ~ 22498928 (+)
AMCG00013152 NA coding upstream 44677 22379235 ~ 22470187 (+)
AMCG00013149 foxk2,LOC107719587,LOC106601484 coding upstream 222363 22276342 ~ 22292501 (+)
AMCG00013148 NA coding upstream 286368 21930055 ~ 22228496 (+)
AMCG00013158 NA coding downstream 79095 22649176 ~ 22655621 (+)
AMCG00013161 LOC107722232 coding downstream 103121 22673202 ~ 22858651 (+)
AMCG00013162 NA coding downstream 311827 22881908 ~ 22923730 (+)
AMCG00013165 NA coding downstream 831059 23401140 ~ 23410915 (+)
AMCG00013166 LOC107581581,LOC108435270,LOC107684054 coding downstream 863759 23433840 ~ 23443384 (+)
G42464 wdr45b non-coding upstream 210122 22300573 ~ 22304742 (+)
G42459 NA non-coding upstream 248228 22266357 ~ 22266636 (+)
G42449 NA non-coding upstream 365077 22149585 ~ 22149787 (+)
G42448 NA non-coding upstream 366351 22148294 ~ 22148513 (+)
G42350 NA non-coding upstream 913896 21528781 ~ 21600968 (+)
G42518 NA non-coding downstream 121851 22691932 ~ 22692216 (+)
G42554 NA non-coding downstream 291734 22861815 ~ 22862982 (+)
G42619 NA non-coding downstream 984591 23554672 ~ 23560660 (+)
G42705 NA non-coding downstream 1214327 23784408 ~ 23831400 (+)
G42779 sstr5,LOC104918336,LOC102219310,LOC102291375 non-coding downstream 1427713 23997794 ~ 24003887 (+)
AMCG00013147 NA other upstream 254048 22248497 ~ 22260816 (+)
G42453 NA other upstream 269074 22242429 ~ 22245790 (+)
G42344 LOC108412647 other upstream 1028056 21426660 ~ 21486808 (+)
AMCG00013118 LOC106594791 other upstream 1043304 21286031 ~ 21471560 (+)
AMCG00013198 NA other downstream 1671188 24241269 ~ 24331854 (+)
G42846 NA other downstream 2177411 24747492 ~ 24749395 (+)
G42858 NA other downstream 2198343 24768424 ~ 24770148 (+)
AMCG00013236 NA other downstream 2943272 25513353 ~ 25521681 (+)
AMCG00013248 NA other downstream 3223324 25793405 ~ 25798013 (+)

Expression


Co-expression Network