G42518


Basic Information

Item Value
gene id G42518
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 22691932 ~ 22692216 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU53014
aataagttaagggagtcacgttgtgccgtttaaaatgcatatatactagcacaaatgatgacgataataataacaatacatatttgctatttattgttgcacatggaaacatattcttatgggaacatgcttatctgaatataatgttgtctacacgtttagctcttcctaatatccctgaacagaaacatgtatttattacgctattacaatcatgtaaagcagaaagaataaaacagacacacaagtcctctcctcgtcaggctgtgtcgctcgtagtgtttc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU53014 True 285 lncRNA 0.35 1 22691932 22692216

Neighbor

gene id symbol gene type direction distance location
AMCG00013158 NA coding upstream 36311 22649176 ~ 22655621 (+)
AMCG00013155 LOC108443565,LOC103481883 coding upstream 177283 22512829 ~ 22514649 (+)
AMCG00013154 NA coding upstream 193004 22497393 ~ 22498928 (+)
AMCG00013152 NA coding upstream 221745 22379235 ~ 22470187 (+)
AMCG00013149 foxk2,LOC107719587,LOC106601484 coding upstream 399431 22276342 ~ 22292501 (+)
AMCG00013162 NA coding downstream 189692 22881908 ~ 22923730 (+)
AMCG00013165 NA coding downstream 708924 23401140 ~ 23410915 (+)
AMCG00013166 LOC107581581,LOC108435270,LOC107684054 coding downstream 741624 23433840 ~ 23443384 (+)
AMCG00013167 LOC103369437 coding downstream 839735 23531951 ~ 23540214 (+)
AMCG00013171 NA coding downstream 889495 23581711 ~ 23610831 (+)
G42488 NA non-coding upstream 121851 22514864 ~ 22570081 (+)
G42464 wdr45b non-coding upstream 387190 22300573 ~ 22304742 (+)
G42459 NA non-coding upstream 425296 22266357 ~ 22266636 (+)
G42449 NA non-coding upstream 542145 22149585 ~ 22149787 (+)
G42448 NA non-coding upstream 543419 22148294 ~ 22148513 (+)
G42554 NA non-coding downstream 169599 22861815 ~ 22862982 (+)
G42619 NA non-coding downstream 862456 23554672 ~ 23560660 (+)
G42705 NA non-coding downstream 1092192 23784408 ~ 23831400 (+)
G42779 sstr5,LOC104918336,LOC102219310,LOC102291375 non-coding downstream 1305578 23997794 ~ 24003887 (+)
G42780 NA non-coding downstream 1315137 24007353 ~ 24007850 (+)
AMCG00013147 NA other upstream 431116 22248497 ~ 22260816 (+)
G42453 NA other upstream 446142 22242429 ~ 22245790 (+)
G42344 LOC108412647 other upstream 1205124 21426660 ~ 21486808 (+)
AMCG00013118 LOC106594791 other upstream 1220372 21286031 ~ 21471560 (+)
AMCG00013198 NA other downstream 1549053 24241269 ~ 24331854 (+)
G42846 NA other downstream 2055276 24747492 ~ 24749395 (+)
G42858 NA other downstream 2076208 24768424 ~ 24770148 (+)
AMCG00013236 NA other downstream 2821137 25513353 ~ 25521681 (+)
AMCG00013248 NA other downstream 3101189 25793405 ~ 25798013 (+)

Expression


Co-expression Network