G42544


Basic Information

Item Value
gene id G42544
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 22574558 ~ 22574827 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU53044
gtcgctgctcctccatcagagggacggattcacagcggcctggttttgcaataacagctctgggactccggcacggcacggcaggacacggacgcttaagccagcgGAACCGAGGCACGATACGCTGTATGTGTCCAACAgtggctgcgtcccaaatcgcacacttgttccctcgtgAAGGAGCCGAATCGAGCCGTCTGTGCCCTTCAATGCTGCCTTCAGCGGAGTGAACGAAACAGCGCACTgatgcggaagtgttttagcgctgaa

Function

GO:

id name namespace
GO:0004722 protein serine/threonine phosphatase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU53044 True 270 lncRNA 0.58 1 22574558 22574827

Neighbor

gene id symbol gene type direction distance location
AMCG00013157 NA coding downstream 2498 22571776 ~ 22572060 (-)
AMCG00013156 NA coding downstream 25051 22537159 ~ 22549507 (-)
AMCG00013153 LOC101159951,LOC102229253,LOC101465124,LOC102212317,LOC102302210,LOC108249263,LOC107387234,LOC101071475,LOC107581637 coding downstream 199198 22370865 ~ 22375360 (-)
AMCG00013151 LOC108443562,LOC103039554,LOC107702472,LOC107566485,LOC107581578,LOC107722231,LOC107755515 coding downstream 207548 22319662 ~ 22367010 (-)
AMCG00013150 wdr45b,LOC107598578 coding downstream 261801 22293328 ~ 22312757 (-)
AMCG00013160 NA coding upstream 35775 22610602 ~ 22631301 (-)
AMCG00013159 tmem100,LOC102794428 coding upstream 69976 22644803 ~ 22645207 (-)
AMCG00013163 NA coding upstream 344471 22919298 ~ 22928441 (-)
AMCG00013164 NA coding upstream 354922 22929749 ~ 22937784 (-)
AMCG00013170 NA coding upstream 897706 23472533 ~ 23483799 (-)
G42450 NA non-coding downstream 424766 22149581 ~ 22149792 (-)
G42440 dnah9 non-coding downstream 668961 21893624 ~ 21905597 (-)
G42382 NA non-coding downstream 1146842 21340970 ~ 21427716 (-)
G42386 NA non-coding downstream 1174400 21399644 ~ 21400158 (-)
G42383 NA non-coding downstream 1227724 21346475 ~ 21346834 (-)
G42553 NA non-coding upstream 131239 22706066 ~ 22706337 (-)
G42557 NA non-coding upstream 241329 22816156 ~ 22816369 (-)
G42704 NA non-coding upstream 1204098 23778925 ~ 23779350 (-)
G42743 NA non-coding upstream 1326616 23901443 ~ 23901920 (-)
G42760 NA non-coding upstream 1337964 23912791 ~ 23917024 (-)
AMCG00013133 wu:fd14a01,LOC101068441,LOC101079795,LOC103368359,LOC107721187 other downstream 1047726 21503849 ~ 21526832 (-)
AMCG00013131 LOC101068441,LOC106598369,LOC106594844,LOC106593081,LOC106593408,LOC104955241 other downstream 1124604 21448329 ~ 21449954 (-)
AMCG00013137 myhm86-1,LOC107373462,LOC107574740,LOC103143810,LOC108243721,LOC106527115,LOC101079795,LOC108261476,LOC101068441,LOC101071797,LOC101163414 other downstream 1152440 21411939 ~ 21422118 (-)
G42381 LOC102793686,LOC103366176,LOC105910910 other downstream 1198795 21337067 ~ 21375763 (-)
AMCG00013184 prkar1a,LOC107708993,LOC106606198 other upstream 1251782 23826609 ~ 23839146 (-)
G42749 NA other upstream 1269256 23844083 ~ 23847477 (-)
AMCG00013204 mafg,LOC108241257,LOC106533856 other upstream 2304814 24879641 ~ 24902428 (-)
AMCG00013216 NA other upstream 2450911 25025738 ~ 25029004 (-)
G43001 NA other upstream 2500566 25075393 ~ 25078244 (-)

Expression


Co-expression Network