G42553


Basic Information

Item Value
gene id G42553
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 22706066 ~ 22706337 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU53058
attcactatatttttgaatgttcccagcttgtcggcttcaaccacattgctggggagtttgttccagattgtgacaactctctgtgtgaagaagtgtctcctgttttccgtcttgaatgccttgaagcccaatttccatttgtatcccaGGGTccgtgtgtctctgctgatctggaaaagctcctctggtttgatgtggtcaatgcctttcatgattttgaagacttggacgTATGCTCCTTTTTATGATGTGTGCCACATACATATGTTGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU53058 True 272 lncRNA 0.43 1 22706066 22706337

Neighbor

gene id symbol gene type direction distance location
AMCG00013159 tmem100,LOC102794428 coding downstream 60859 22644803 ~ 22645207 (-)
AMCG00013160 NA coding downstream 74765 22610602 ~ 22631301 (-)
AMCG00013157 NA coding downstream 134006 22571776 ~ 22572060 (-)
AMCG00013156 NA coding downstream 156559 22537159 ~ 22549507 (-)
AMCG00013153 LOC101159951,LOC102229253,LOC101465124,LOC102212317,LOC102302210,LOC108249263,LOC107387234,LOC101071475,LOC107581637 coding downstream 330706 22370865 ~ 22375360 (-)
AMCG00013163 NA coding upstream 212961 22919298 ~ 22928441 (-)
AMCG00013164 NA coding upstream 223412 22929749 ~ 22937784 (-)
AMCG00013170 NA coding upstream 766196 23472533 ~ 23483799 (-)
AMCG00013169 NA coding upstream 780008 23486345 ~ 23492834 (-)
AMCG00013168 LOC108435267,LOC107755502,LOC107722214,LOC107581584,LOC107702479 coding upstream 848335 23554672 ~ 23563336 (-)
G42544 NA non-coding downstream 131239 22574558 ~ 22574827 (-)
G42450 NA non-coding downstream 556274 22149581 ~ 22149792 (-)
G42440 dnah9 non-coding downstream 800469 21893624 ~ 21905597 (-)
G42382 NA non-coding downstream 1278350 21340970 ~ 21427716 (-)
G42557 NA non-coding upstream 109819 22816156 ~ 22816369 (-)
G42704 NA non-coding upstream 1072588 23778925 ~ 23779350 (-)
G42743 NA non-coding upstream 1195106 23901443 ~ 23901920 (-)
G42760 NA non-coding upstream 1206454 23912791 ~ 23917024 (-)
G42800 NA non-coding upstream 1514314 24220651 ~ 24222738 (-)
AMCG00013133 wu:fd14a01,LOC101068441,LOC101079795,LOC103368359,LOC107721187 other downstream 1179234 21503849 ~ 21526832 (-)
AMCG00013131 LOC101068441,LOC106598369,LOC106594844,LOC106593081,LOC106593408,LOC104955241 other downstream 1256112 21448329 ~ 21449954 (-)
AMCG00013137 myhm86-1,LOC107373462,LOC107574740,LOC103143810,LOC108243721,LOC106527115,LOC101079795,LOC108261476,LOC101068441,LOC101071797,LOC101163414 other downstream 1283948 21411939 ~ 21422118 (-)
G42381 LOC102793686,LOC103366176,LOC105910910 other downstream 1330303 21337067 ~ 21375763 (-)
AMCG00013184 prkar1a,LOC107708993,LOC106606198 other upstream 1120272 23826609 ~ 23839146 (-)
G42749 NA other upstream 1137746 23844083 ~ 23847477 (-)
AMCG00013204 mafg,LOC108241257,LOC106533856 other upstream 2173304 24879641 ~ 24902428 (-)
AMCG00013216 NA other upstream 2319401 25025738 ~ 25029004 (-)
G43001 NA other upstream 2369056 25075393 ~ 25078244 (-)

Expression


Co-expression Network