G42554


Basic Information

Item Value
gene id G42554
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 22861815 ~ 22862982 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU53059
GCAGAATTAAACGCAAAACCAGTTGCAAATCTCAGAAGCTTAGCATAGCATCTTTCTTTTCTGAATTCAAATACTATATATTTCCTTTGCAACAGTTTTTCAATTTTCCAAGCCCTCATGAAAGTGTAACTAAAAATTGATTAAGTATTAAAAGTTCATGATTATcgatgaaaaaaaaagttacatatatttctaaatacacaatgttctgatgtattcagtatttttttatgaatgcattttgtatatAGGTGCAAAGATCAGGCATATCTCACATTAAAAATCGGGATTCAGAATACAGGcaagaaaaaatgcattaataataatagtggaaATAAGAAGGTGTATTAAAGGTGGTGTTAGCTTGTGAAGTAttgttatataaacaaaatccaGGAGGTAGTAAATACTGGTTTTCTGCAAGAAATGTTGACGACAGCTTTGCATGTGCCATGAGCTTTTGTTCCGTTGTTCCTGGTGTAACCTTTGTTTGAAGGACGTTGTGCATTAATTGTAGACAGATTAAACTGTGAATGAAATCTTTGAATAATGATAACAAGTATTTAAATGCTGGGACAAATCGAGCAAGTTTATTGATCACCACACTGGAAccttttgtaatatataaaggTTGTTCTATTGTATAACgttttactgtactgttttttgATCACAGAAGAAAAGCCTTAACTGTTGGCATGTTTGTGAATTGCTATTTTGCTACAAGGATGTATGTTGTTGCCATCTAAAGTATGGGCACACTGTTGCTTTATTCTCAAAACcaagtagattttttttatatagtgtaTTCTGAATGtccattttgtttgaaatgaacGTAAGTGTGTGACAGCACTAAACACTAcagacattaaaatgaaagttgTGAGTTTTATTGATCTATTCTCTCCCTGCACTGTGTGATTACTGATTGTACGCTATACCCcgagttacacacacacacacttaaaggCTAGATTAAGATACTTTTTTCAGACACCTGATGGCTTATACAGATATTGGAACATAACAGTATATGAtagattaaaatgaatagatTTAATTGTTTATCAGGTTATTCCTCCTGTTTAATTCTcaaaaaaatccacaaagacTCCTGAATACATCCACAGACTCTGCATCCAAAGCTCAGCCTGGCAGTTTTTTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU53059 True 1168 lncRNA 0.33 1 22861815 22862982

Neighbor

gene id symbol gene type direction distance location
AMCG00013161 LOC107722232 coding upstream 3164 22673202 ~ 22858651 (+)
AMCG00013158 NA coding upstream 206194 22649176 ~ 22655621 (+)
AMCG00013155 LOC108443565,LOC103481883 coding upstream 347166 22512829 ~ 22514649 (+)
AMCG00013154 NA coding upstream 362887 22497393 ~ 22498928 (+)
AMCG00013152 NA coding upstream 391628 22379235 ~ 22470187 (+)
AMCG00013162 NA coding downstream 18926 22881908 ~ 22923730 (+)
AMCG00013165 NA coding downstream 538158 23401140 ~ 23410915 (+)
AMCG00013166 LOC107581581,LOC108435270,LOC107684054 coding downstream 570858 23433840 ~ 23443384 (+)
AMCG00013167 LOC103369437 coding downstream 668969 23531951 ~ 23540214 (+)
AMCG00013171 NA coding downstream 718729 23581711 ~ 23610831 (+)
G42518 NA non-coding upstream 169599 22691932 ~ 22692216 (+)
G42488 NA non-coding upstream 291734 22514864 ~ 22570081 (+)
G42464 wdr45b non-coding upstream 557073 22300573 ~ 22304742 (+)
G42459 NA non-coding upstream 595179 22266357 ~ 22266636 (+)
G42449 NA non-coding upstream 712028 22149585 ~ 22149787 (+)
G42619 NA non-coding downstream 691690 23554672 ~ 23560660 (+)
G42705 NA non-coding downstream 921426 23784408 ~ 23831400 (+)
G42779 sstr5,LOC104918336,LOC102219310,LOC102291375 non-coding downstream 1134812 23997794 ~ 24003887 (+)
G42780 NA non-coding downstream 1144371 24007353 ~ 24007850 (+)
G42816 NA non-coding downstream 1547860 24410842 ~ 24411044 (+)
AMCG00013147 NA other upstream 600999 22248497 ~ 22260816 (+)
G42453 NA other upstream 616025 22242429 ~ 22245790 (+)
G42344 LOC108412647 other upstream 1375007 21426660 ~ 21486808 (+)
AMCG00013118 LOC106594791 other upstream 1390255 21286031 ~ 21471560 (+)
AMCG00013198 NA other downstream 1378287 24241269 ~ 24331854 (+)
G42846 NA other downstream 1884510 24747492 ~ 24749395 (+)
G42858 NA other downstream 1905442 24768424 ~ 24770148 (+)
AMCG00013236 NA other downstream 2650371 25513353 ~ 25521681 (+)
AMCG00013248 NA other downstream 2930423 25793405 ~ 25798013 (+)

Expression


Co-expression Network