G42619


Basic Information

Item Value
gene id G42619
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 23554672 ~ 23560660 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU53136
TTcaacagaataaatatttattggttAGGTTTTGCAACAGGTCACTATAAAAGcatgtaaaaaatatacagtttcttCTACAGGTGAGGTGAATTTAAAGTGCATTCACAGAACAGTGTAGACAGACAGGGTAAACCTGACTGTGAAAtcagcttatatatatatatatatacacatacacacacacacagtatgtgtgtatatatgtatatttatatattttcctttcttgaaatgaaatttatatatatatatatagttttttttgtaaataaaaaataacattttagtaCATTTTCACAACTCAATATTACCTCTCCCCCACACACAAGTAGAGGGGTGACATTAAGGGAGAGGGGTGACCCGGAATGACTGACTTCATACTGGCCAAACACAGCTGAAATTACCCACAGCCTGAGCACTCACTACAGACAACTGTGCTCCATGAAAAGTTGTAATGAAGACAATAGCTGGTGTGAAATGCCCCAACGTAAGTCTTCAGCTCAAAATACTGCAGACGACAGAGAACGTAGAGCTTTTACTTTTCAATGGTCTCTGTTGTGAGAGAGAAGGTAGCCCTTGCTgcctacttaaaaaaaaggttCTCCCTCTTTATTGGTGCTAGAGGGGAATATGGCATATTGTTTCAAGCAGCTTTTTCTGCTGTAAACAGGATTACGGTCCAAAGAGAAGGAAGGAAGCTCACAGAGATGCGTTTTCACGTTTGGGTTTATGAAGCACCTCTCCGCATCACaaaaagaatgtgttttaatgttatttgtgCTGGATGCTACATATGCTAATAGTTTGAAGATTTTGAAATTAAGGTCCTGTCTCCCTGCTctgctgctgttattgttatttagatttagtttttttaccaTTCAATTGCCAAATCTCACAGTGGGTTTCTTCTTTCTTACTGTAATTTTCCTGTCTTTCAGGGGAATGCCAGGTTAAAACACTATAGGCTCAATATAGACAGCCAAAGTGTAAGCAGAGGACCTGGGACAGCCTGAGATGCCCTCAGATCTTGTATCATATAAATCTTACTGCTTTTGTTGTCTTCTGCTGAGAATGTGGACATAAAGTGTGCTTTACTTTTGATGATCCTTCTTCTTTACTCGGTGTCATCTATCCAGTGCCAGCCCTAGTTCTAAGTCTAAGTTCTCTCTAGGTGTACAATACGGTAGTTTCTTAAGTAAAAGGGCATTTAAATCGAACAGCATTGTTTCTGGATTGGGTGTAGGTGTGGTATTGCTGTCTTCACAATACAAAGGCTGGTCCCAGAAAGATCTAAGATGGCAGTATGACAAGTGAGCCTTTGCACTCTGGTGTTTTGCCACCCAACAGAAATGTTAAACAAACTTGCTGTTCTTGCAGGACAGAAGAAAAATTCCAACTTTAGAAACAAAGATTGCCTCACCATTTTGGGACACCCCTCcccatttcaaattcaaaagaaacattttacagtCATCATACTCCAAGGTGTGTAATACATTGATACACGTAATATAGACCCACTGAACtctgaaaaacacatacacacgcatacacaaaTACTGTTACAGAGAATATTTTGATATTCAGCCCCCAATAGGggatgcaaaaataataatatacaaaatatcagGACAGATGTATTagatttattgaaataaatcgTCTGCTCTATTTATAGTTTTCTCAAAGAGCAATTATCTCCGTTAAAGCATTGCAACCAACGAGATTGAAGCAGCAATCAAACtgccacagcacacagacacaaataaccTAAACACATTTCATTATGCTAGCCCTGAAATATTCTTCagcatcttatttatttatttatttatttatttatttatttatttatattttttggctcacattcaaatttgaaacttttgtaatgttaattttTCAAAGTAACTGACTAGAGGATATATTTGAAGAATGTTAGgctacaatgttttttttcatttgcatcatATTTACTATTGAACCTTTCAGAATGCACtttagtgtttgtttaaatacatctaTCATACCACAAGTtagttaaattgttaaaaattGACATATGAAGTCCCATATGAAACCATTTCACCTAAAGGACATTTGGTAACGATATTTGTAAATGAGCTTTCTATTTGTAGAAGTGTAATTTTCAGTCGGGTACAGTCCTTTCTGTATTACCCAGACAAGCAGAATAGattctattatttgtttaatagaaATAATGACCTTTGTAATTGACAGGTTGTAATAATATGAAATCAGCAAtggagttaaaataaaaacatttaatgtgaaaatagaaaaatacaaaaacaacaggatgcatatgcacacatttaatgttaccaaaaaaatgaattaagcTGCAATGTGAGGAAATGTAGTAAAAATTAACCACAACCTCCCCACCCCAGCTGATTTCCTGAGAGGGGAAATGTGGGAGAACACTTCTGTTTCTGTGCATGGTACACACCATTGTGCAAGATGCGAACCTATGCAGACTGATAGATAGGCAGTtatgatgtttttatataataaaaaataaaagaatctcCCTTTGACCATGCATAGTGCCAAATCAGCCTGCTCTCACTTTTCACTGTTGCACACAGGGCCAGTCAGAGTCGAGGACCCTGATTGGGTGCTCAATTAAACTTCCTAGGGTTCTGATTGGTTACACCATCTGCAGCTGTATAATGGGTTTTGGAGCGAGAGAGGGTTGATGGGAATTCTGGGTATTTGAAAGATAGCATCAGTTTGTTAAGAGTCTCTGCATCCTAACCCCACAGTTGCATACTCATGTATTCCCCGCCTTCCATATTAAATGACTTTGGTTAGATCATAATAGAAATTATGGACTAGCCTGCCATTTGACAGTGGACTCAGATATCTTGCCAAAATACTCATTGCTGTATTAGTAAGCAGGTAAGGAAAATGTATAGTTGGCATAATATTGTGTCTTACTGTATTGGAAACTATTTACCAATTACTTTTTGGAgtctttttttaagtattataaGGTagctcccaggcagaaatgtctGAATGGTAAGgcactaaaaaaagaaaaataaagagagagaatcTTACGTGAATGGCACCATCCCATTTCCCTCTTTTGCTGCTGCTTGGCATTTGATGAGGGGGTACACAGCTGTAATGAATGGGATGGAAGGCAGGGGGGGCTATCTGCCCTTGAACATGGGAGTGAAGGCAAGAGCCCACCCATCATGAATGTGTGAGTTGTTATAAATGTTCAAAGAGTTAGTGTAAGGGCTGAGGACCTTGCTCAGGGGTGGATTCTCCCCTGACATCCTCTGTTTTATCTGAATGTGATTGTAAGGCGTGCtattatgtgtttattaatggCTATGACTTGGGCTGATGAGATCTTGGTATCGCTGTGTGACTGCAGCTTCCTGCTTGAACCCTGCAATCTGTGATTCCTTCTGTCTGAGCTTCCTCTGAGCAGCATACATACTCTTGACAGACTACGACATTTCCATAGCTAATGATCATCAGCATatcttcactttttaaaatgtattacaaatttaagcaaagaaaaatgttgGCTGCCGACTGTCCATTTCTTCATTTGCATTGTCTGTTTACATATGACATGTAAACCCTgcccccccaaaacaacaacacaagattAAGTACCAtctatttttctccttttagtTCAGGATTGTAAGGTTATTGAGGAATTAattcctgcttttaaaatgtaccatACACAATAATATCCATAGCACAcaacaaagcttttaaaacagtgtgacacacatacacaacaaatTCAAACACATAGCAGCTGCAAACTCCACAGTCAATGCAACGTtattgtttaatacaaaataaataaaataaacgttgACATCAGACAATGTCCAATTCTGCTTATTCACTAGATATCTGAGACCCATCAGCTGGTTTATCTAATACTGACATAGTGAGATGAAAAttgaagaaaagacaaaaggtGAAATAGGATGTTTGACATTTcaatgcttttaatatttcattgattttttttattttccccaatcAATCTATAAGGGGGTTCTGTAGGCCTCAATGCTTCAATAAACATGAGAAAGACTGATGTAGACAAGGAAGGATGTCCTGAGGGCAGTTGCTTGCATACTTCTtctatgttattattttgctttttatgtaATCCTAATAATTCTATAACGTGTCTGGACTTACACAAGATTCAGAACCATTCTCGTTACTCTACCAATGTGACCTTTATCTTCAGTGTAACTTCCTTCACccacaaaattacataagttCCTCTTATGCACACAAATAAACCTCAGGATTGCCAGATTGGTCACACCCCCACAAGCAGACAAGAACTTTCTCCTCGTATAGtgaaacaacaaagaaattgattacatttatttttaatgttggtttGGACTTTGCCAAATCGCTGCTCAAACAGTCTTCTTGTTAATGCAGAGTTTCTTTTAGGATTAACTGGTTTAATTTTGAATCGCAGTTCAGTAACAAAATGTTCCCTTTGAGGACTGTACAGTCACTCTAACAAACCACCCAAATCCCCCGTAATTTTGGATTAATAGTAATCAAGTACACAGTAATTTCAATTCATCACACAACTTGGGCCCTAGATGGAAATGAAGAGAAATGCAAAATGGCCGCCAATAGTGCTAGTCTTGATGTGGAGTcgtaacactgacaaaacaaacaaacaaacaaaaccacacaaaacaaaacggTAAATTGATTTCCCAATATCTTTGGGAGTTCATGTTTggagtaaagaaaaaacaaaaaaagaattcaaaagcatttttgaaGAAGTCTGTGCCACAACCAGTTTCCCTGGAAAGGCTTCCTTGCTCACCTACCTGCAAAAGCAGATATATAGGCATACCCTCCTGAAACGACAGCAGTGTTCCTCGTGCCATACAAGTGCCACCCTCCTATTCCACTCTTCTTGTTTTACCACTATATTGACCCTCTAGATAGAATCCTTGttttaaagtagaaaaacaCATACCAAACTGCCAGGAGAACTTTCCACATAAGGGACAATAACAGGACCCTCCTCTTCGTACTGTGCAAGGCCAGTCCATCAGTGATGATAAAGAAGGGTGAAATCCATTTTTACAGatcaatttattcatttattttgtggagtGTTGTTCCAGTGCatcgttttattttttcttctgtatgtgttttctgttgttattattgaattctcatgtttttgtgttggaTGCATATTCTCATATGGCACAGCCCCAGAGAGTACATAAATATTACacctaaataaatatacaagatTCTGAAATTCCAGATTTGTCCCACGTCAAATCTGGGACAattctggggggggggtggcgggTTGGGGTGCGGTTCGCTCCCTCCCATTCAGTCAGCCTGGTTGTGTCAAGGCCCTCACTCAAACACAGGTCTCTGGGTTGGTGACCAATTCTCCATTCTTGTCCGTATTGTCCTTGAGGAACTGCTCCACCTCAATGGAGTCCACCTTCACGCTGTCAGGCCTCTTGTCCTCTTCCTTCTCTTTGTCCTcatctttctccttctctttgtccacatctttctccttctccttctctttgtccaaatctttcttcttctccttctccttctcatgGTCCTcatctttctccttctccttctctttgtCCTCatctttctccttcttctctttGTGCTCCTTCACGTTCTCCTCTTTCAGCTCCTTCAccccttcctcctcttcctccacctcACCAGGAGGCTTGTTGAGTTGCTCCATCTCTGCAGCTGTCACTGCCATCTCCAGTTTGGCTTCTGGCTCTGCTGGTTTTTTCTTGATGCAGAAGTAGTTTCCAAAGGCCAGCACCAGGGCAGAGATCACCACCTCACACCCTGCTATCAAGAACACATACATGAAGTGTCCTGTGGCGTCAA

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU53136 True 5967 lncRNA 0.38 2 23554672 23560660

Neighbor

gene id symbol gene type direction distance location
AMCG00013167 LOC103369437 coding upstream 14458 23531951 ~ 23540214 (+)
AMCG00013166 LOC107581581,LOC108435270,LOC107684054 coding upstream 111288 23433840 ~ 23443384 (+)
AMCG00013165 NA coding upstream 143757 23401140 ~ 23410915 (+)
AMCG00013162 NA coding upstream 630942 22881908 ~ 22923730 (+)
AMCG00013161 LOC107722232 coding upstream 696021 22673202 ~ 22858651 (+)
AMCG00013171 NA coding downstream 21051 23581711 ~ 23610831 (+)
AMCG00013172 fasn coding downstream 57477 23618137 ~ 23651153 (+)
AMCG00013173 dus1l coding downstream 92839 23653499 ~ 23681825 (+)
AMCG00013179 NA coding downstream 128158 23688818 ~ 23690170 (+)
AMCG00013174 rfng,LOC106610281,LOC107708990 coding downstream 161497 23722157 ~ 23735304 (+)
G42554 NA non-coding upstream 691690 22861815 ~ 22862982 (+)
G42518 NA non-coding upstream 862456 22691932 ~ 22692216 (+)
G42488 NA non-coding upstream 984591 22514864 ~ 22570081 (+)
G42464 wdr45b non-coding upstream 1249930 22300573 ~ 22304742 (+)
G42459 NA non-coding upstream 1288036 22266357 ~ 22266636 (+)
G42705 NA non-coding downstream 223748 23784408 ~ 23831400 (+)
G42779 sstr5,LOC104918336,LOC102219310,LOC102291375 non-coding downstream 437134 23997794 ~ 24003887 (+)
G42780 NA non-coding downstream 446693 24007353 ~ 24007850 (+)
G42816 NA non-coding downstream 850182 24410842 ~ 24411044 (+)
G42845 NA non-coding downstream 1184863 24745523 ~ 24745754 (+)
AMCG00013147 NA other upstream 1293856 22248497 ~ 22260816 (+)
G42453 NA other upstream 1308882 22242429 ~ 22245790 (+)
G42344 LOC108412647 other upstream 2067864 21426660 ~ 21486808 (+)
AMCG00013118 LOC106594791 other upstream 2083112 21286031 ~ 21471560 (+)
AMCG00013198 NA other downstream 680609 24241269 ~ 24331854 (+)
G42846 NA other downstream 1186832 24747492 ~ 24749395 (+)
G42858 NA other downstream 1207764 24768424 ~ 24770148 (+)
AMCG00013236 NA other downstream 1952693 25513353 ~ 25521681 (+)
AMCG00013248 NA other downstream 2232745 25793405 ~ 25798013 (+)

Expression


Co-expression Network