G42743


Basic Information

Item Value
gene id G42743
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 23901443 ~ 23901920 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU53287
NNNGTCTCCCAGATCCCCATTCAGTGGGTGTGACCAACCAGTGAGAGCTGTGTCATTGCAGGAGCAGGCCTGAGGGTCTGGAACCCGCTAGGCTGCTGAAGACCAGGAAATGGCTGGATTTAGCTGGTTGGaaaattcagtaatttagttCAGTTAGTTGCTTACAACCCTGCTGCTTGTGTTTAACATTTGATGGCTACTGTGTCAGTGATCTCTTGCCTAAACCGTGACCAAGCATACAATCAGAATAGCTCAGAAAAGCAAGTATTGCATTTGACATTTCTGATTGGATTTTCCCTTTTGATGCCAACAAGAAAAGACAGTGGTGGTGTATTAATACCAGACATTTGAGCTTCCGAATGCATTAATCTGTTAACaattattgtgttgttattataattgtttgtcGTATACCTCCGTGCTGAAAAGCTTTGCAAGTGATCTTACACTCCCAGTCACGAGAGGCGCAGATGTCCCA

Function

GO:

id name namespace
GO:0030119 AP-type membrane coat adaptor complex cellular_component
GO:0030123 AP-3 adaptor complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU53287 True 478 lncRNA 0.43 1 23901443 23901920

Neighbor

gene id symbol gene type direction distance location
AMCG00013185 NA coding downstream 19175 23866640 ~ 23882268 (-)
AMCG00013176 lrrc45 coding downstream 128410 23758274 ~ 23773033 (-)
AMCG00013178 rac3a,rac3,rac3b,LOC108436959,LOC106610298,LOC100712409 coding downstream 144842 23744746 ~ 23756601 (-)
AMCG00013177 gps1,LOC107654488,LOC107721507,LOC107688111 coding downstream 179931 23710700 ~ 23721512 (-)
AMCG00013168 LOC108435267,LOC107755502,LOC107722214,LOC107581584,LOC107702479 coding downstream 338107 23554672 ~ 23563336 (-)
AMCG00013190 NA coding upstream 998 23902918 ~ 23912316 (-)
AMCG00013191 LOC107721501,LOC107688114,LOC107590387,LOC107601276,LOC107654495 coding upstream 15280 23917200 ~ 23927578 (-)
AMCG00013189 LOC108438014,LOC105012792,LOC105899987,LOC107719992,LOC107654495 coding upstream 39791 23941711 ~ 23948688 (-)
AMCG00013192 NA coding upstream 83207 23985127 ~ 23995256 (-)
AMCG00013193 sstr5,LOC104918336,LOC102219310,LOC103393002,LOC102291375 coding upstream 100806 24002726 ~ 24003841 (-)
G42704 NA non-coding downstream 122093 23778925 ~ 23779350 (-)
G42557 NA non-coding downstream 1085074 22816156 ~ 22816369 (-)
G42553 NA non-coding downstream 1195106 22706066 ~ 22706337 (-)
G42544 NA non-coding downstream 1326616 22574558 ~ 22574827 (-)
G42450 NA non-coding downstream 1751651 22149581 ~ 22149792 (-)
G42760 NA non-coding upstream 10871 23912791 ~ 23917024 (-)
G42800 NA non-coding upstream 318731 24220651 ~ 24222738 (-)
G42993 NA non-coding upstream 1143458 25045378 ~ 25376323 (-)
G43011 NA non-coding upstream 1234856 25136776 ~ 25139743 (-)
G43040 NA non-coding upstream 1387550 25289470 ~ 25351738 (-)
G42749 NA other downstream 53966 23844083 ~ 23847477 (-)
AMCG00013184 prkar1a,LOC107708993,LOC106606198 other downstream 62297 23826609 ~ 23839146 (-)
AMCG00013133 wu:fd14a01,LOC101068441,LOC101079795,LOC103368359,LOC107721187 other downstream 2374611 21503849 ~ 21526832 (-)
AMCG00013131 LOC101068441,LOC106598369,LOC106594844,LOC106593081,LOC106593408,LOC104955241 other downstream 2451489 21448329 ~ 21449954 (-)
AMCG00013137 myhm86-1,LOC107373462,LOC107574740,LOC103143810,LOC108243721,LOC106527115,LOC101079795,LOC108261476,LOC101068441,LOC101071797,LOC101163414 other downstream 2479325 21411939 ~ 21422118 (-)
AMCG00013204 mafg,LOC108241257,LOC106533856 other upstream 977721 24879641 ~ 24902428 (-)
AMCG00013216 NA other upstream 1123818 25025738 ~ 25029004 (-)
G43001 NA other upstream 1173473 25075393 ~ 25078244 (-)
AMCG00013223 tk1,kith,LOC102792372 other upstream 1260237 25162157 ~ 25166773 (-)
G43070 NA other upstream 1614160 25516080 ~ 25516963 (-)

Expression


Co-expression Network