G42749


Basic Information

Item Value
gene id G42749
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 23844083 ~ 23847477 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU53293
AAGctattaatcattattacacagacacacaagtaaCTTCAAAAGGATACcaaaacttaattttatttagtgtCATACAACTGGATTGGAAAATATACACCAAAAGactcaaattatatatatatttgttgtcttTAGATGAGCAATTACCTCTATGGTATGTGATTTAAGAATAGGcccaaaatgtaatatttatagttattttattttgttgttcattaacaccttatataaaaaatgttgaattattaaaaaaatacaatactatatactatattactGACTGTAATGAGACAAGCATGTCTCCATGTCAGTAATGGACTGGACCAGTAGTGCTATGCTATGTGCAGGGTGTTGTTTTTAGGACAGCACTTTACCGAACAATCACTCCCTTCCCCCCAAGCCTGGGTTCAATTTTATGCTAAttacttgaaaaacacacaaacttagaaatcaaatgtaaatcaaCTGTAACCTATAGTCTGTCTGAATAGAATAGACATTTTCCTTTGTTGTAACTCCAGACAGGACTAGAATCTGTGGTATAGCGTATCCATACTTGCAGTGTGATTATAAAGAAATGAAGgatccattttcaaaattatgaaatgtGTTGGTGATTCAGTGTATAAATGCTTATATACACAGCATCTGATGAGAGAATGTAGCAGTCAGTTCAGGAATACAGCAAATAAAGTGATTTTCATCTTCACAATTTTTAGTgctGAAATCCCAGACCACCATGGCTCCATCCAGGCCCACACTACTGAACTTGTTCACCTTGGCTTTCTCCCCCTCGACAATGCACAGCTGGCTGCAAAAGAGATCAAAACAACGACACACAAAGAACATTATATAGTGAAAGACATCAAATAGCCCAAGGAgcattttatacagtatatgcacAGACAATCTCTTAATCATGATATCATAAAATAAGAGATATAAAAGGAATTTGCTCTTGAGAAAGTCCTCTCGTATCAAAGGCACCGTAGCCTACACACTCATCCTTGGGACTGGACACCAGTTCACTCCCTGATTGGAGTTGTGTGGGAGATTTTGGCAGCAGGgacttatttttctctttcatttagTGAAACCCacgagagagaaaataaaagccaTTTGGAGGCTGTCTGCCATGTTATGTTAGACCCAGAGAGTTAGGCAGGGCAGTGGAAATTGGCAGGAAAtgcaataagaacataagaaagtttgcaaacgataggaggccattcgacccatcgtggtcctttggtgtccattaataactaagtgatccaaggatcctatccagtctatttttaaatgttcccaaattttcagcttcaaccacatcgttgGGGATGTGGTGTCTTCTGCAATGAAGGTGTCTCACGTGATGCTGTTCTGGTGTAGGGTGAAGAGCTCGTTGTCGTCCTCCTCAGCGGTGGCCTTCTTGTCCAGTTTGCGGAAGTGCTGCATGGCAGACACGCTACTCTTTGAACTCTGTTTGGGAATATCCAGCTTCTTCACAAACTGCAGTTTGTCTGGCCCTGCATACGAGAACTGGTATGGGTAGCAGTCATGGCCGCACCCACTATCTCAGTCTCATTGACATACAGCACgctgaggagagggaggtaCACTGTGTTGAGCCGCGTCACTCTGTCTTTGCCCTGAGCTGCATCCACGACACTGATGCTGCTATTGTGACTGACCCAGGCCAGCCGGTCTCCAGAGGGGGAGAAGCAGACATCATGCACCCAGCCCCCACAGTCCCTCTTCTCCAGCAACATCTCCCCAAATGGCATCTTTGCCCCCCAAGCTGTTGGGCCGGGCTTCTCCTCAATGTCCTTGATGTAGGCCGAAAAAATCCTGCACAGAAAAGACATGgagcacacaa
>TU53294
AAGctattaatcattattacacagacacacaagtaaCTTCAAAAGGATACcaaaacttaattttatttagtgtCATACAACTGGATTGGAAAATATACACCAAAAGactcaaattatatatatatttgttgtcttTAGATGAGCAATTACCTCTATGGTATGTGATTTAAGAATAGGcccaaaatgtaatatttatagttattttattttgttgttcattaacaccttatataaaaaatgttgaattattaaaaaaatacaatactatatactatattactGACTGTAATGAGACAAGCATGTCTCCATGTCAGTAATGGACTGGACCAGTAGTGCTATGCTATGTGCAGGGTGTTGTTTTTAGGACAGCACTTTACCGAACAATCACTCCCTTCCCCCCAAGCCTGGGTTCAATTTTATGCTAAttacttgaaaaacacacaaacttagaaatcaaatgtaaatcaaCTGTAACCTATAGTCTGTCTGAATAGAATAGACATTTTCCTTTGTTGTAACTCCAGACAGGACTAGAATCTGTGGTATAGCGTATCCATACTTGCAGTGTGATTATAAAGAAATGAAGgatccattttcaaaattatgaaatgtGTTGGTGATTCAGTGTATAAATGCTTATATACACAGCATCTGATGAGAGAATGTAGCAGTCAGTTCAGGAATACAGCAAATAAAGTGATTTTCATCTTCACAATTTTTAGTgctGAAATCCCAGACCACCATGGCTCCATCCAGGCCCACACTACTGAACTTGTTCACCTTGGCTTTCTCCCCCTCGACAATGCACAGCTGGCTGCAAAAGAGATCAAAACAACGACACACAAAGAACATTATATAGTGAAAGACATCAAATAGCCCAAGGAgcattttatacagtatatgcacAGACAATCTCTTAATCATGATATCATAAAATAAGAGATATAAAAGGAATTTGCTCTTGAGAAAGTCCTCTCGTATCAAAGGCACCGTAGCCTACACACTCATCCTTGGGACTGGACACCAGTTCACTCCCTGATTGGAGTTGTGTGGGAGATTTTGGCAGCAGGgacttatttttctctttcatttagTGAAACCCacgagagagaaaataaaagccaTTTGGAGGCTGTCTGCCATGTTATGTTAGACCCAGAGAGTTAGGCAGGGCAGTGGAAATTGGCAGGAAAtgcaataagaacataagaaagtttgcaaacgataggaggccattcgacccatcgtggtcctttggtgtccattaataactaagtgatccaaggatcctatccagtctatttttaaatgttcccaaattttcagcttcaaccacatcgttgGGGATGTGGTGTCTTCTGCAATGAAGGTGTCTCACGTGATGCTGTTCTGGTGTAGGGTGAAGAGCTCGTTGTCGTCCTCCTCAGCGGTGGCCTTCTTGTCCAGTTTGCGGAAGTGCTGCATGGCAGACACGCTACTCTTTGAACTCTGTTTGGGAATATCCAGCTTCTTCACAAACTGCAGTTTGTCTGGCCCTGCATACGAGAACTGGTATGGGTAGCAGTCATGGCCCTGGGAAAACAAAGTGGAAAAATCACTTCACTGtactggagagagggagagcaattTCATCAAGGGTCTGGATGGTAA

Function

GO:

id name namespace
GO:0005911 cell-cell junction cellular_component
GO:0005921 gap junction cellular_component
GO:0005922 connexin complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU53293 True 1885 TUCP 0.42 4 23844083 23847477
TU53294 False 1650 lncRNA 0.39 2 23845405 23847477

Neighbor

gene id symbol gene type direction distance location
AMCG00013176 lrrc45 coding downstream 71050 23758274 ~ 23773033 (-)
AMCG00013178 rac3a,rac3,rac3b,LOC108436959,LOC106610298,LOC100712409 coding downstream 87482 23744746 ~ 23756601 (-)
AMCG00013177 gps1,LOC107654488,LOC107721507,LOC107688111 coding downstream 122571 23710700 ~ 23721512 (-)
AMCG00013168 LOC108435267,LOC107755502,LOC107722214,LOC107581584,LOC107702479 coding downstream 280747 23554672 ~ 23563336 (-)
AMCG00013169 NA coding downstream 351249 23486345 ~ 23492834 (-)
AMCG00013185 NA coding upstream 19163 23866640 ~ 23882268 (-)
AMCG00013190 NA coding upstream 55441 23902918 ~ 23912316 (-)
AMCG00013191 LOC107721501,LOC107688114,LOC107590387,LOC107601276,LOC107654495 coding upstream 69723 23917200 ~ 23927578 (-)
AMCG00013189 LOC108438014,LOC105012792,LOC105899987,LOC107719992,LOC107654495 coding upstream 94234 23941711 ~ 23948688 (-)
AMCG00013192 NA coding upstream 137650 23985127 ~ 23995256 (-)
G42704 NA non-coding downstream 64733 23778925 ~ 23779350 (-)
G42557 NA non-coding downstream 1027714 22816156 ~ 22816369 (-)
G42553 NA non-coding downstream 1137746 22706066 ~ 22706337 (-)
G42544 NA non-coding downstream 1269256 22574558 ~ 22574827 (-)
G42450 NA non-coding downstream 1694291 22149581 ~ 22149792 (-)
G42743 NA non-coding upstream 53966 23901443 ~ 23901920 (-)
G42760 NA non-coding upstream 65314 23912791 ~ 23917024 (-)
G42800 NA non-coding upstream 373174 24220651 ~ 24222738 (-)
G42993 NA non-coding upstream 1197901 25045378 ~ 25376323 (-)
G43011 NA non-coding upstream 1289299 25136776 ~ 25139743 (-)
AMCG00013184 prkar1a,LOC107708993,LOC106606198 other downstream 4937 23826609 ~ 23839146 (-)
AMCG00013133 wu:fd14a01,LOC101068441,LOC101079795,LOC103368359,LOC107721187 other downstream 2317251 21503849 ~ 21526832 (-)
AMCG00013131 LOC101068441,LOC106598369,LOC106594844,LOC106593081,LOC106593408,LOC104955241 other downstream 2394129 21448329 ~ 21449954 (-)
AMCG00013137 myhm86-1,LOC107373462,LOC107574740,LOC103143810,LOC108243721,LOC106527115,LOC101079795,LOC108261476,LOC101068441,LOC101071797,LOC101163414 other downstream 2421965 21411939 ~ 21422118 (-)
G42381 LOC102793686,LOC103366176,LOC105910910 other downstream 2468320 21337067 ~ 21375763 (-)
AMCG00013204 mafg,LOC108241257,LOC106533856 other upstream 1032164 24879641 ~ 24902428 (-)
AMCG00013216 NA other upstream 1178261 25025738 ~ 25029004 (-)
G43001 NA other upstream 1227916 25075393 ~ 25078244 (-)
AMCG00013223 tk1,kith,LOC102792372 other upstream 1314680 25162157 ~ 25166773 (-)
G43070 NA other upstream 1668603 25516080 ~ 25516963 (-)

Expression


Co-expression Network