G42760


Basic Information

Item Value
gene id G42760
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 23912791 ~ 23917024 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU53312
gtcGCACGTGCCAACCTCAGAGAATGTTTGGCGGAAAAAGCAGCAGGGATACTAAACCTGTGAGGCAATGCTGTAACaccctgtgtgtttttgttttagaaactgCTAcgaaaatgttttttctccccTGTTTCTCTCCTATAGTGATGAAAGCAATGTTGGTGCCAATAACTTGGTAGTCACTCAATAGCCTACATTAATTGTTGAAGGATGTTTATTGGGATTTCCACGAAAACTGAAAGGTGCCCAGTAAAATCGGAGCAGTCTTAATGCCGGTCTTAGAGGCTTTACACCTGTCGCATATGCTGAAACTATGCAAGCAGGAATGGACAAAAGTCTGTCTGTATTTTCACTGAAAGGTTTTTTTCACTCTACAGCCAGACCAGGATTTTGAATTTCTGTGATTCAGTATTTTTCAAATCGTTCTTGTCCAAAGTGCCACATTTTAAGGGAATGCAGGTTGGACATGCAGGAGTTGCAGCTCCTTCTACTACCCCGTTCTTCCCTGTTAGCAAACTACTCCTTTCTGTTGGGTatagaaatgcaaaaagaaGCTGTTGGTGAAACGGACTCTGTCATGGCATTACGGTTAACGTTTCAGCGGTGGTCATAGCAGTCTTAATCTTTATGGTGTTGGCTGTAATTTTGTGATGTGTAACCACAGTAAAGTATGCAGTGCACTGGACGATTTTTTGCTCTTCAGTCTTCACCTGCCTGTCTTCACATTGTGGTTAAAGCCCCACATGGAAAAGACAGATGTAGCTGTTACAGTGCCGATTTAACATACTCCCATATTTCGGCCATAACCAAACCAAAAgtcagggttttgttttttttgtttttctgtaaaggTCTTCATACAGATCTAAACCTATTAATACTGTAATCCACCTTCATCAAGCACTTGGTGCCTCTTAAAACAGGAAAACTGTAAATGATGAACCTGTGTATAAAACTATAGTAATGTGTAGCCCCTGTATGTGGGAATGCTGAATTCTGATCATTCGTTTGCTGTAGTCATTTTTGTCCACATGAGTGAGTGGGGATGCACTGTTTGGtggatggttttgtttttgttattttctttaaggcAAATTGAATCAAACATTCTTGAGGCTATTTTTGTCTTAAGTCCACTATGGAGATCTTGTGCCATTCGAAACGGTCTAGATATAGAAATAATTGAACTGATACTTGCTGACTGAAGTGTTTGTAAAGGCAAGGTGTCTTGCCCCTGCGGATGTTGTATTCACTGTCCCAGGACTGTGCTGCAAGAATGGCTCCAGGCAGGACAAACTGCACAAAAGGGTCTCTGTCCTGCAAGAGTGGCCTTGTGATCATGAATCGGACGAGGCcctgaatgttttgtttttcatgttcaaGCAGCTGCATTGTGCAGTGCTAATTTTTATCCTATTGGAGTTTGCCACTTGAAAACTTTTTTGTTCATCATATGAAATCCACGACCTAATTGCTTACTCATCAGGTATAAAGCTAGGTATTACTGAAGAATCATGATCATTTTGTGTCCTCTGATgtcagcttttttattttataattctaAAGTCACAttgtttcaatattaattttaagttGTATACAGGGAAGTCTTTTGTACAGGAGTCTGTGTATTAAGAGCCAGGTCCGATCCAGTTAGGTTTTCTGCagtgacattttgatttaaaagttcTGTTTGGACAGGTCTCTGCATTTTCTCTGTATGGTTATTATGGATGAATGACAACGTAAGGATTTTACCATATATCCTGCATCCCTTTTGTAATTCAATAACTTTTAAAAGCCAAACATGTGACTCTGCTGTCAACTGAGCAATAGCTTCCTGCCAATAAACGTTGTGCCTCCTCAGTGGttattgtacttgttttttgcttttatacCTAGGCTGCAGGCTGTTTGTCTAGTACTGCGCAACTGCAGCTTCTAACCTGCTGTCCTAATTACTCACTGTGGAGACCAGTAAGTATGCAATCCCTTGAGTGAATAATCCAATCATATGGTGTCTGCATCAGCAGAGTTAAGTGAGAAATTTCAAAACTTGCTTAGTGGTTTCGAAACGAGGTGAAGTCTCAGGTAACTCTTCAATAACTTCAGCCACGTAGTGTTGACGGGAATGGAACATCGCTTAATGTCCGGACTATAAAAgcaaattcactttttttttatcgcTAAGTGTAGCTAGTATATTTGGAGGGTCATATATGAGAGAAGAGGCTGGCCACTGTCTTTGTCTTGAAAGTCTGTCAGAGGGGTCACCTGTATGGTGCATGGTACCGAAAGGCAGAGTAGTTTCCCCACAGTGTAGACGGTGAAGCGAACCGATCAGGGCTAGCTTTGCGGTTTCATTCGAGTGCTCATTCCAGGCAACGTCCAGTCTTTCTCTGGCTCCTCCGCCAAGTCCTGTAATTGTGAAGGAACGATATTGTTGACGAGGAAAATATTAATCATGCCGTTGTGGTATAAAACAATACTGTAGCCCTTTTCTCTGTGATAACTATGCAACACAagcaaattgatttttattttttatttaaggatAAGGATCTGAATGTCCTCCATTTGAAAGGAGTGatggtagttttgtttttgaggcaattgtttttttaaataaactttttcaaGTGATTTGccagaaatgaaaaatgcaattacaatACAGTGCCTAAATAGCCAGttatacttattttgttttgtgggttTTGCTGCTTGCCTTAAGTTTGTGCATGCCCATTGAATGAATATCGAGAAACTCTGGAAatgctttgtatgttttttctacACTCTAAAAACACCTGAGCTTGATTTAAAGATGAGTGTGGGCAACAAGCCAGATGCAATTTACCCATTTTTTGTTCTCTACTAAATACTTTCTTTTGAATAACTTGTCCGTTTAGACATGCTTgtcttttgtatatatatgccTTAATGTTAGCCATGACCAGAAAAAAGTGACAACATTTTTACACAACCCTTCTGAACATTTGTTTGGGTAGGATGGGGGAGGGTTGAGTTGTTGTTCACTGTACATTCTCCAGACAAACTGCTCTGCTGTCCTACCCCCTTTTTCCATCTTTTCAATAAAAACCTTTTTgaaacctg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU53312 True 3117 lncRNA 0.40 3 23912791 23917024

Neighbor

gene id symbol gene type direction distance location
AMCG00013190 NA coding downstream 475 23902918 ~ 23912316 (-)
AMCG00013185 NA coding downstream 30523 23866640 ~ 23882268 (-)
AMCG00013176 lrrc45 coding downstream 139758 23758274 ~ 23773033 (-)
AMCG00013178 rac3a,rac3,rac3b,LOC108436959,LOC106610298,LOC100712409 coding downstream 156190 23744746 ~ 23756601 (-)
AMCG00013177 gps1,LOC107654488,LOC107721507,LOC107688111 coding downstream 191279 23710700 ~ 23721512 (-)
AMCG00013191 LOC107721501,LOC107688114,LOC107590387,LOC107601276,LOC107654495 coding upstream 176 23917200 ~ 23927578 (-)
AMCG00013189 LOC108438014,LOC105012792,LOC105899987,LOC107719992,LOC107654495 coding upstream 24687 23941711 ~ 23948688 (-)
AMCG00013192 NA coding upstream 68103 23985127 ~ 23995256 (-)
AMCG00013193 sstr5,LOC104918336,LOC102219310,LOC103393002,LOC102291375 coding upstream 85702 24002726 ~ 24003841 (-)
AMCG00013194 NA coding upstream 105353 24022377 ~ 24023420 (-)
G42743 NA non-coding downstream 10871 23901443 ~ 23901920 (-)
G42704 NA non-coding downstream 133441 23778925 ~ 23779350 (-)
G42557 NA non-coding downstream 1096422 22816156 ~ 22816369 (-)
G42553 NA non-coding downstream 1206454 22706066 ~ 22706337 (-)
G42544 NA non-coding downstream 1337964 22574558 ~ 22574827 (-)
G42800 NA non-coding upstream 303627 24220651 ~ 24222738 (-)
G42993 NA non-coding upstream 1128354 25045378 ~ 25376323 (-)
G43011 NA non-coding upstream 1219752 25136776 ~ 25139743 (-)
G43040 NA non-coding upstream 1372446 25289470 ~ 25351738 (-)
G43042 NA non-coding upstream 1449242 25366266 ~ 25424074 (-)
G42749 NA other downstream 65314 23844083 ~ 23847477 (-)
AMCG00013184 prkar1a,LOC107708993,LOC106606198 other downstream 73645 23826609 ~ 23839146 (-)
AMCG00013133 wu:fd14a01,LOC101068441,LOC101079795,LOC103368359,LOC107721187 other downstream 2385959 21503849 ~ 21526832 (-)
AMCG00013131 LOC101068441,LOC106598369,LOC106594844,LOC106593081,LOC106593408,LOC104955241 other downstream 2462837 21448329 ~ 21449954 (-)
AMCG00013137 myhm86-1,LOC107373462,LOC107574740,LOC103143810,LOC108243721,LOC106527115,LOC101079795,LOC108261476,LOC101068441,LOC101071797,LOC101163414 other downstream 2490673 21411939 ~ 21422118 (-)
AMCG00013204 mafg,LOC108241257,LOC106533856 other upstream 962617 24879641 ~ 24902428 (-)
AMCG00013216 NA other upstream 1108714 25025738 ~ 25029004 (-)
G43001 NA other upstream 1158369 25075393 ~ 25078244 (-)
AMCG00013223 tk1,kith,LOC102792372 other upstream 1245133 25162157 ~ 25166773 (-)
G43070 NA other upstream 1599056 25516080 ~ 25516963 (-)

Expression


Co-expression Network