G42779 (sstr5,LOC104918336,LOC102219310,LOC102291375)


Basic Information

Item Value
gene id G42779
gene name sstr5,LOC104918336,LOC102219310,LOC102291375
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 23997794 ~ 24003887 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU53336
aaataataatagtaataatatttacaaaagcaTAACATTTGTCTGGAGAGCATATTACAGAAACCACAAACAGagcaagttttctttttctctgtatataaatgtttttcattgtgtaaCGGCTGTTTGTTGAATAGGTTCAGGCTGACGGACAGATACTGTTCTGCACACAACTGTGTGTGACATAACAAATTTCAGCCCCAGACTTGCAGAGGTCAAAGGGCAATTTAATGATTGAATACAAATGTTAGGGATACGTTTCCCAGTAAGGTCAAAATCTACACACCCCATTTTAACTTAGTTCAATCAGCGTTACAGTTTTCTTTAGGCAGATTAAGTGTTCAACAAACAAAGTATAGATTAACAAACcgtttttattaaatgaaactaatcacagaataacacagATTTGGGTAAAGGGATGTGCATACTTTCAATCACAATTGTACATGTTTAAAGCATTCGTTATCTGCTTGAAATgtgacaaatgtgttaatgaggaaggcaaatcaaataaatacataaataaatacataataaataaataaaaccagcaGGTGAACATGTacaacaatattgttttatattatataactacttataaatcatgtatacctttttgaaaccacttaaatataagtatttaatatattgtgctCGAAAAACATTAGATCTGCTAAAATGGCCAGATATGCAAACTTAAGAGTTAACGCTATACAAGAACTATACAATATTACCCAACACGACAGTTTTTGGCACTGTTGTTGTATAAGTGTAAATAGAGAGAACAGAGCCAAGAATCGGCAAATAACTAGAAAATCAGGACTCATCACTATCTTTCTAGATACTTTCTGTATccgatacaaaaataaaaatataagtcTGCAGTGGTAAAGCTGAGCTGAACTATGTGTAGTTTTGCGTCAGCTGTCAAAATGACAGGGATGTGTCCTCATATCAATCTAAAATGTATCACTTTCACTCAGCAGGGGTCTAAACTAATATTAGCTTCCCCATGGCCACCTATTCTAATCTACCCGACATCCTGTCTGAAAATTATATGATTCCCATAAGTGAGGTGCATTAAATCAAGAgggaataataaaaacagaaggaagggtggaaataattaaacattgaatAGTCTGCTTTGCCGATCTGTACAGGCTAACTGTACAAGTAAACACATAAAagttgttttataaatatataaatatgtacagagCACACTGTGTCCATCCATGCTGTTTTCAAAATGGTTATGTTGGGGGTACATTATTTACAGTCTATTCTGAATCTCTTGTGGTCTGTTCTGATCCTGAAAATATGTTCGTACCCTTCATGGTCTCTGGTGTGAACATGTCTAAGATAGTATATGAGAAAAAAAGGTGAACAATATAATTGTCATGGGTTGAACTTTACAGTGGCTCAGCCATTTTTCAaggcaaggaaaataaataaaaatgtacataaaatacaGTGGCCAGTGATGCAGTTCTTAGACTGTatgcactatactatactgtatatgGGCTAACCACAGCTTCTAATGGGGTCCAATTGCAATTTAGTTGTTTTACTGCAGCCTCAAACACtcaagctgttttttatttttgttgctatGGAGATggaggcaaaaaataaaaaataataagaagaattgCTTTCCCTGTGAGGTCTCTTTTCATGGGGACCATGGGcgaatgttaaataaatgcattccacaaatcttttttttttgccacacATTACTGGTACCTGACATTAGAAGCAAAGGTTAGGAAAGGGGTCATTTGGTGTCCATATTAGATGAAGAGAGAAGCATTAAAGGATTGTATGGAGCTGAGTGCTAGCACAGTTGTCTCCAGTTTGGTTTATCACAAATGAAGTCAATAttaatttctattaaaatatatatttggagcTTACCAAGagcagtaatttaaaaatattgttaaatagaCTGTAACACCTGAAATGCTGCCATGAAGTGCACTTAAAAAAGCAGGCTAGTACGcaatttcaattatattaagttcatacataaataaatacaaacaaaaacagcaagagcaacaacaacaatcttaaaattgttattaaatGGCAGCCTTGGAGACTAAATGTTTAACCACAATACATGAACGTTAACTTCTCAGTTGGATGGAAACAGTCTATTTTGTAAAGAGTAAGTATTGTCCTAGCAACACTGTATTTGTTGTAATGTTTACAGCTGAAGAATTTTACTTTGACCCTATAGTTGACAGATAAAGAGATAGAAGGCTAAGAAGTGGAAATATGACAACTTGGatacaaacagataaataaataatcctctATGCATGAAAAAGAAGAGGGATATTCATCTCATCCCCCCTCCCATGTAATCCCACACCTGTGATCAGACAGGACACCGTGAGACGTCATGGTTTTTTGGCCTCACTGGCTGAGCAAACTGTTGCACTCATTAGGGTGGAATAGCAGTCTATAAAGGCACGATTCCTGTCATTTATCAAGGCTTGACAGGGAGCCGATGCACCCACGCGTGGTCAAGCATCACCCATGCTGCGGTCAGCACGGGGCAATAGGTATTTGAGTAGGAACGCTGCACTCGGGGGTGCGTGTTCTAGCCCTTCGCAAATTGTTTGGGGAGAGGACACAAGTCACAGCGGTCAAGAGCTTGTGAGCCAGACTCCAGATAGCACGGCCCATAACACTGCCTATGTCTAccgttgttttctttcttcttgctttttaatgttttataatatgaCCAGGcacactgtctgtgtgttcCTTCGGTCTTCTTTTTACAGGTACCTGAAAAGCTCATGTGGAACCCAGTCCTGATGATATCAGCCTATCCTCATCCTTCAGTATGGGTTTATAACTTCCTCAGCTTCCACTAAATGCAAGGTCTGAATGtgctttaagaaacaaatcAGGACCTACAGAGgctttctaataaaataaataaaataataataattacactattTCTTTCAGTTCGCATGTTATGTGAGAATAGAAAACCAGCAAGATGTTATCTTACCTGCATTAGGTGTGTGAAGACCTATGCTGAACATATAGGAGCTGTGTGTTATGGTGGAATTTAATGTTgctctttgaaaatgttaaattattataattacaatatatattttttcctccatAATCTACAATAAATTGGAAGTCACTTTGTTCtagtatattataaataatgacatgACAATGTTCTAACCAGATTATagtttttacaaataaattatagttGATATACTGACCATGACTTGTACCAAATGTAGAGATGTTGAAAGCTGACACTGAACAAACATGCCTAAGTCTCTAAGAGTTCCACAAACATTCTGTTAACTGGAGCAGCGGTTTAGTTAATATCCAACTCACTACAGTATTGTGTAAGCAAAATGTGGCACTCGGGAATAACCAAATGAATGCCTGGTGCTGTATAAAACTCCACTATAatcccacattttattttaacaaaggaTTGGGATggtgcaaaaagaaacaaatactttttttatgtatgtatgtataaacaaacaaaaactcgaAACGACACAAAAAACCCTTGGCATAACAAGAATACATTCACTATCATTATCACTCCCATTAGAATCACAGTCATGACTAAATAACAGCACTTCAGGTTTATGGAGAGCGtaaattgacattttatatCCTTGTGCACAGTTACtagggattttatttttcccatatAGGGAACGGTTAATagatataaatagaaaaatagattAGCTGTAACAAAGAGAGCTCTCAACCTTAATATTGCTAAACACCACTCCGAATATGAATGTTAAACTGAAAATTCAAATTGGGATGCCAGTTGCATTCTTACCTCTTGTTAGTAATTGTCTGACAAAATACAGCAGGTATAATACAGCCCTATGACAAGAAGATATCAAGTACTTTTAAAAGATTAGTTTTTGCTAGGTTTCCATCAAACACTTGTAAGTACAACTATATGTATCAACAGTGTGAAGTGTTAGCAGTACACTACAGAAGGACCAAACTGGGTATCTAAGATATACAAAGTGGGATGGTGCTTTTCATAGATGTCAATGGTACTGCAATAGTAAACAGAGCAACATCCTAAATGTcagttatttctgttatttaaatgcCAAAATATCCCTTCACTGTGAAAGTGCTTTTCTTTGAAATAGAAGACTCTGTAATgtgtctggaaaaacaaaacaaaacaaaaatagtacaatatatatatatatatatatatatatatatatatttttttttttttttctctgtacagGGGCCTGAGACAAGGAATCGtttaaaaactatacatttctaattaattgCTGAGAACATCTCTTTTTCCTACTGAAGTGACACTTTTTTATGACATCTCTATAAACCTAGAAAAATTCTGAACAGGTtagaaatctgaaaatattagTTTTGCTAGCAGGTTTTCCACAGAGTCAGaatctttgaaatgtaaagtcACCTGATTCTCAGTGTTTTCAGTCCATTCAAACAGAGGGCATCTATCACTTTAAACAgataaatgaaaactgaatcataatggatttatttgtcTTCATAAATAAGCTATAAGTGAGTATAATAACTTAGATATCAAAACAATGTCTGTATTAAAACATTCCCACCTTCCACCGAAAggagtttttttaaattttcatcacttttcatTTGTCATAACAGAATGTTTATAGACTGTTGTCCAGTAGTTGCAGAAGCTTCGTTGTGTCCCAGTTCAATTTCCTAAAGTGTAGTACGGTGTCATGCAGTGTCTGAGAGCAGCAATTCATGCTGTATTCAAGTTTTGGCATTGAAGATACCATTCTACTACTGAGAATGGCAAGAGATTCATCAAATTTCCACAGTCATCAACCCCTCGACCATTTAGATGCTGGTCTGCAGGTCCCCGTTCAGCAGagtgctttgtgtttctgtggcaTCGTTCATCATCCGGGTTTTGTCCTGTCGACTGTCACTCCTGTCTATATCATCCAGGCCCCCCACCTTCTTGAGACACAGCACATTCTGAAAGCTCTTCTTGAAGTTCTCTGACAAGAAGGCATAGAGGATGGGGTTTGCACAGCTGTTGGCGTAGCCCAAAACCACCACAAAGTCGAAGGTGCTCTTCAGCACGGGGGTTGTTTGAATGGTGCCTGTCACAGAGGTGACGTTGAAGACATAGAAGGGCAGCCAGCAGAACACGAAAACTGCCACCACAATGGAGACCATGCGGGTGACCTTCCTCTCTGACTTCTTCCTCTTGGAGGAGCCCACCCGGATCCCAGAGGACTTCACTTTGATGATGATGAGCAGGTAGCAGAGGCAGATGACAGTCAGGGGCAGAAAGAATCCTAGAAAGAAGGTGTAGAACATGAAGCCAGTGTAATATGCCTCTGGAGGGTCAGGCCAGATGATAGTGCAGCTGCTCACATTGTGCTTGGTCAGCAATCCACTGTAGATCATAATGGGCAGATTGACGACCACAGAGATTATCCAGACCGCCAGGTTGATCATCTTGGCCATCCGAGGCTTCCTCCACTTGGTGGACTTGATGGGATGGACCACAGCCAGGTATCTGTCAATGCTCATCACTGTCAGGCAGAAGATACTGGTAAACTGGTTCAGCCCATCCACTGTCATGACAATGCGACAAAGGGCTTGTCCAAAGGGCCAGTGGACGAAGGCGGACTGTATGGCAATGAAGGGCAGCCCCAACATGAAGAGCTCGTCAGCAACTGCCAAGTTCAGGATGTAGATGTTGGTGACTGTTTTCATCTTGGCGTAGCGTAGGATGACATAGATAACCAAGGTGTTCCCACAAAGCCCCACCGCGCACACCACGAAGTACATGAAGGTAATGACCACAGTGCTGGTCTTGTTAAAGTGGTGGTCAGTGAAGTTGTGGGTGTCGCTTCCCGTGGTGTTGGCTGACTCATTTAAGCCATCGTACATCCAGGGGTCTGTCAGGTTGGGGAGGGCGTGGAATATCCCAAGATCCATCGTGCGTGTCTTCGTCAGATTTTGAATCACTTCATATATGACATGC

Function

symbol description
sstr5 Predicted to enable neuropeptide binding activity and somatostatin receptor activity. Predicted to be involved in cellular response to glucocorticoid stimulus; neuropeptide signaling pathway; and regulation of insulin secretion. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in neuron projection. Predicted to be integral component of plasma membrane. Human ortholog(s) of this gene implicated in bipolar disorder. Orthologous to human SSTR5 (somatostatin receptor 5).

NR:

description
PREDICTED: somatostatin receptor type 5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU53336 True 6094 lncRNA 0.38 1 23997794 24003887

Neighbor

gene id symbol gene type direction distance location
AMCG00013187 NA coding upstream 13369 23973082 ~ 23984425 (+)
AMCG00013188 NA coding upstream 35837 23952046 ~ 23961957 (+)
AMCG00013186 NA coding upstream 96187 23887584 ~ 23901607 (+)
AMCG00013181 wipi1,LOC107719990,LOC107590389,LOC107688112,LOC107721503 coding upstream 133598 23849175 ~ 23864196 (+)
AMCG00013180 NA coding upstream 150364 23840594 ~ 23847430 (+)
AMCG00013195 NA coding downstream 18944 24022831 ~ 24116258 (+)
AMCG00013197 NA coding downstream 121019 24124906 ~ 24192482 (+)
AMCG00013196 slc39a11,LOC107693650 coding downstream 212623 24216510 ~ 24220719 (+)
AMCG00013200 NA coding downstream 770911 24774798 ~ 24777606 (+)
AMCG00013203 NA coding downstream 784738 24788625 ~ 24793416 (+)
G42705 NA non-coding upstream 166394 23784408 ~ 23831400 (+)
G42619 NA non-coding upstream 437134 23554672 ~ 23560660 (+)
G42554 NA non-coding upstream 1134812 22861815 ~ 22862982 (+)
G42518 NA non-coding upstream 1305578 22691932 ~ 22692216 (+)
G42488 NA non-coding upstream 1427713 22514864 ~ 22570081 (+)
G42780 NA non-coding downstream 3466 24007353 ~ 24007850 (+)
G42816 NA non-coding downstream 406955 24410842 ~ 24411044 (+)
G42845 NA non-coding downstream 741636 24745523 ~ 24745754 (+)
G42847 rnf213,LOC107701915,LOC107556605 non-coding downstream 745805 24749692 ~ 24750256 (+)
G42848 NA non-coding downstream 746421 24750308 ~ 24750565 (+)
AMCG00013147 NA other upstream 1736978 22248497 ~ 22260816 (+)
G42453 NA other upstream 1752004 22242429 ~ 22245790 (+)
G42344 LOC108412647 other upstream 2510986 21426660 ~ 21486808 (+)
AMCG00013118 LOC106594791 other upstream 2526234 21286031 ~ 21471560 (+)
AMCG00013198 NA other downstream 237382 24241269 ~ 24331854 (+)
G42846 NA other downstream 743605 24747492 ~ 24749395 (+)
G42858 NA other downstream 764537 24768424 ~ 24770148 (+)
AMCG00013236 NA other downstream 1509466 25513353 ~ 25521681 (+)
AMCG00013248 NA other downstream 1789518 25793405 ~ 25798013 (+)

Expression


Co-expression Network