G42780



Basic Information


Item Value
gene id G42780
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information


Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 24007353 ~ 24007850 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence


>TU53337
GCCATTCAGAATCCAATCCAGGAGAATGCATGAACATAGTGTTTTATTCGTTGGTTAATAGTCGTGGGAAAGCGCAGAAATCCCAAAGATGCCTCCAAACACTGATCTCCCTACCTTTACACACCTGTGTGCCCCAAACACGCACTTTATTGTAGGAGAGCTTGTAACTCAGCAGAGAAACTAATGAAAAGAGAAAGTCATCTGCAagatacatacattcatatataaattagattttttttatcgAACTTGTctttatgctttaaaataaataagtacaattgCAAAATGAGTTAAATGCTACAGAGGTAATAGAGCATCGTCTTGCCAGTTGCATCTCTGCTCTGCCTCAGTGAGAAGGAGACCGACTGCTCTCTGCTCGGTCTGCTGCATGATGTGATGCCATCAGCAGGGCGCATTTGGATACACTTGCACTAGGCTGCTGTTTGCGGGAGGTTCCAGCTTTAAACGCAGATGGTGCTGCTGGGCCACTGGCTC

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU53337 True 498 lncRNA 0.44 1 24007353 24007850

Neighbor


gene id symbol gene type direction distance location
AMCG00013187 NA coding upstream 22928 23973082 ~ 23984425 (+)
AMCG00013188 NA coding upstream 45396 23952046 ~ 23961957 (+)
AMCG00013186 NA coding upstream 105746 23887584 ~ 23901607 (+)
AMCG00013181 wipi1,LOC107719990,LOC107590389,LOC107688112,LOC107721503 coding upstream 143157 23849175 ~ 23864196 (+)
AMCG00013180 NA coding upstream 159923 23840594 ~ 23847430 (+)
AMCG00013195 NA coding downstream 14981 24022831 ~ 24116258 (+)
AMCG00013197 NA coding downstream 117056 24124906 ~ 24192482 (+)
AMCG00013196 slc39a11,LOC107693650 coding downstream 208660 24216510 ~ 24220719 (+)
AMCG00013200 NA coding downstream 766948 24774798 ~ 24777606 (+)
AMCG00013203 NA coding downstream 780775 24788625 ~ 24793416 (+)
G42779 sstr5,LOC104918336,LOC102219310,LOC102291375 non-coding upstream 3466 23997794 ~ 24003887 (+)
G42705 NA non-coding upstream 175953 23784408 ~ 23831400 (+)
G42619 NA non-coding upstream 446693 23554672 ~ 23560660 (+)
G42554 NA non-coding upstream 1144371 22861815 ~ 22862982 (+)
G42518 NA non-coding upstream 1315137 22691932 ~ 22692216 (+)
G42816 NA non-coding downstream 402992 24410842 ~ 24411044 (+)
G42845 NA non-coding downstream 737673 24745523 ~ 24745754 (+)
G42847 rnf213,LOC107701915,LOC107556605 non-coding downstream 741842 24749692 ~ 24750256 (+)
G42848 NA non-coding downstream 742458 24750308 ~ 24750565 (+)
G42849 NA non-coding downstream 742957 24750807 ~ 24751467 (+)
AMCG00013147 NA other upstream 1746537 22248497 ~ 22260816 (+)
G42453 NA other upstream 1761563 22242429 ~ 22245790 (+)
G42344 LOC108412647 other upstream 2520545 21426660 ~ 21486808 (+)
AMCG00013118 LOC106594791 other upstream 2535793 21286031 ~ 21471560 (+)
AMCG00013198 NA other downstream 233419 24241269 ~ 24331854 (+)
G42846 NA other downstream 739642 24747492 ~ 24749395 (+)
G42858 NA other downstream 760574 24768424 ~ 24770148 (+)
AMCG00013236 NA other downstream 1505503 25513353 ~ 25521681 (+)
AMCG00013248 NA other downstream 1785555 25793405 ~ 25798013 (+)

Expression



Co-expression Network