G42846


Basic Information

Item Value
gene id G42846
gene name NA
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 24747492 ~ 24749395 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU53407
CTGCATAAACCAAATGTTGAATATGATTTAGGGTAATTACGGTTACTCACCAACTCCGGCTCTTTTGGAGGATACAATTCCCACAAACATTCCTTGCTTGAAAACAGATGCTGCACTGGACTCCTCCGAGGACACGGTGAAATGTCGGCTGAGGTAGGCCTGAATCGCTTCCAGAGGCTCATGGGGAATCATGTGTATTTTGTCCTGGCTGAAGGCTGACGGAATGTAGTAGTGCTCCCTGTCAGAGTTGCAGATGATCACCAGCTTGTAGTCCTCCCTGCACTGCATCTTCAGCTtcaaaaaaaactgttcaaattTGTAGCTGACTTCATAGGTCAGCTCATCTGCATACAGCAGGGTGTAAATCTTCTCTCCCCGGTAGCCATCTGTCATGCACCTCCTCAGGAAGAGCTCCACCTGCTCGTACGTTGTGTTGGCTGTGCATAGGAGGACTTCGTCATAAGTGGGCAGCTGCTCTTGACCTTTGCTCATATAGATGCAAATGCAGGACATCAGGATTTCAGCATGTGGGCATACAATGAGGTTTGGGCGCCCCTCCTGCAGACCCTTGGGCAGACTTCTATTGACAATATTTTTCTCCTCTTGCTCATTGGTGGCCAGAAGCTCCAGCAGCCTCCCAAGAGTTCCAATGTCTAAACAATGTGGCAGAAAATGCTTCATGTCTCTCATGTATAAGTTCCACACCAGTTGGAGTTTTTCAGTGTCCTTGGCACAGTCCAGTAAAGCTGGCAGATCATCAATGGAgtaattatcttttttgttcAGTTCCTTGAAGTCCAAGTCCATGCTGGCCTCATCAACAAAAGTCTGAAACTCCATCTCCTCATTTTGCTGAGCATCCTTCTGCAGAACTTCATACTGCCACTCGTGCCACGCATCTCTGATACCTGTGACTTTACAGTTAGGTTTAATGAAAGAAAGCATCATGAGGACTTGTTCATCAAGACACGTGAGCTTTTCCACAGTTAATTTATTACACAGGTAGACGATCTGCTCTGCGGTGTAGTAGTTAAGGTAGTAATGCTGGGATCTTTTGTTGTCCATGAACCCCTTCCAGAACTCCAAACACTTCTCCATTTTCTTGCACAGCTCTGGCAGCTGCTCCACAACTTCTCCAGCGATGATGATCTCCCCCACTGTTTTCTCCAGGTTGAAATCGATGATAATGCCTGCTTCACTGTGCTCACTACAGTTAATATTAGCTTCCCAGTTCCTGAACAGCATGTTCCCAGCAGCATAAAGATCAATAAATGCCACTGCCAGCCTTTGGACATTGGAAAACACCTGCAGAGGGGAAAGATCATTCCAGCACTGAAAACATGcttgatttttgtattgttatggcttttgttagaaatataaagtatattagtttcaattaatattaatatcaatacattttactgttgAGCTATACAACTGAGTATCTGTGTCACTATTCTTTCATCTTAGGTTActaaattttaatattttacattttaccacCTTAAGTCATTAGAAAAAGCAACTGTGGTGTCCAATTGACAAATTCCTGTCTGATGGTGACTTGAAGGTTACAAATTGGGTAGATGGCTAAAAGTTGTAAACAGCAGTTGTAACTGGTGTAGACTCCACTTTTTACGCTGGAATACAAACACAGGGACAACTTCTTAATTCTTCAGGAAGCCAAATGTAAAAGACATCAGCTAATACAAGTCAAAGCAAGACGACAGAAATCACCTCGGCAAAGTGCTCCACTTCGCACTGGCCCTGCTCCCCTTTCCCAGACATCAGCATCAGCTTGTTCTGGAGCTCCTTCAGGTCCTCCAGGGAGTAACAGCGCAGCTCCTGCCCCTCCTCGTGCTCTTCAGGTATCTTCAGCTGGATGACATTGTCCAGACTCA

Function

NR:

description
PREDICTED: plakophilin-4-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU53407 True 1904 TUCP 0.44 1 24747492 24749395

Neighbor

gene id symbol gene type direction distance location
AMCG00013196 slc39a11,LOC107693650 coding upstream 526773 24216510 ~ 24220719 (+)
AMCG00013197 NA coding upstream 555010 24124906 ~ 24192482 (+)
AMCG00013195 NA coding upstream 631234 24022831 ~ 24116258 (+)
AMCG00013187 NA coding upstream 763067 23973082 ~ 23984425 (+)
AMCG00013188 NA coding upstream 785535 23952046 ~ 23961957 (+)
AMCG00013200 NA coding downstream 25403 24774798 ~ 24777606 (+)
AMCG00013203 NA coding downstream 39230 24788625 ~ 24793416 (+)
AMCG00013202 NA coding downstream 48932 24798327 ~ 24799733 (+)
AMCG00013209 NA coding downstream 205576 24954971 ~ 24957583 (+)
AMCG00013215 NA coding downstream 224322 24973717 ~ 24991262 (+)
G42845 NA non-coding upstream 1738 24745523 ~ 24745754 (+)
G42816 NA non-coding upstream 336448 24410842 ~ 24411044 (+)
G42780 NA non-coding upstream 739642 24007353 ~ 24007850 (+)
G42779 sstr5,LOC104918336,LOC102219310,LOC102291375 non-coding upstream 743605 23997794 ~ 24003887 (+)
G42705 NA non-coding upstream 916092 23784408 ~ 23831400 (+)
G42847 rnf213,LOC107701915,LOC107556605 non-coding downstream 297 24749692 ~ 24750256 (+)
G42848 NA non-coding downstream 913 24750308 ~ 24750565 (+)
G42849 NA non-coding downstream 1412 24750807 ~ 24751467 (+)
G42850 NA non-coding downstream 2412 24751807 ~ 24752082 (+)
G42855 NA non-coding downstream 17861 24767256 ~ 24767458 (+)
AMCG00013198 NA other upstream 415638 24241269 ~ 24331854 (+)
AMCG00013147 NA other upstream 2486676 22248497 ~ 22260816 (+)
G42453 NA other upstream 2501702 22242429 ~ 22245790 (+)
G42344 LOC108412647 other upstream 3260684 21426660 ~ 21486808 (+)
AMCG00013118 LOC106594791 other upstream 3275932 21286031 ~ 21471560 (+)
G42858 NA other downstream 19029 24768424 ~ 24770148 (+)
AMCG00013236 NA other downstream 763958 25513353 ~ 25521681 (+)
AMCG00013248 NA other downstream 1044010 25793405 ~ 25798013 (+)
AMCG00013251 NA other downstream 1403841 26153236 ~ 26161139 (+)
AMCG00013255 NA other downstream 1505579 26254974 ~ 26258982 (+)

Expression


Co-expression Network