G42847 (rnf213,LOC107701915,LOC107556605)


Basic Information

Item Value
gene id G42847
gene name rnf213,LOC107701915,LOC107556605
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 24749692 ~ 24750256 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU53408
CTTCTTCTGGTCCTTTGAGCTGATGATGTAGATGCCCTTCTTGTTAATCGCTGAAGCCAAAGAGAGTGAGGACAACTCCACTGAACCATGACTATCCTTTACAGTCTTCAACCACTCCAGGTGCCGTGCTGTGTCACACTGaatccagaaaataaatatccttCAACCTTCTATCATCTCACTCTCAATGTGTACTGCatgacaaaatatacaattttatttttaaagataatataacatatttgtgatctgtaataaataaatctctcaGTACTTAAATACAGGTGTTGAAAAACTTTAAgatgactgtactgtactctggGCTTGCAAGAGGTGTAGTGTCCTACCAGTTTCTTTGGGAGGTTAGGGTCATTATCGAGGGCCTTCCACAATTTCTTCAGTGCCTCCTTAAAGACATCGAAGCTAGCATCCGCCTTCAGGTCGTACAGCATGGAGGAATAGCCCAGGACAGCGTCGTGGAAACAGGCCACACGATCAACATCCAAGTCATTCTCACCAGCAGAGATGGAGGCCAGGTCCACAAATACTTTAAGCTCATTGATAT

Function

symbol description
rnf213 Enables ubiquitin-protein transferase activity. Involved in several processes, including cellular protein metabolic process; protein homooligomerization; and sprouting angiogenesis. Located in cytosol and nucleolus. Implicated in Moyamoya disease.

NR:

description
PREDICTED: E3 ubiquitin-protein ligase RNF213 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU53408 True 565 lncRNA 0.42 1 24749692 24750256

Neighbor

gene id symbol gene type direction distance location
AMCG00013196 slc39a11,LOC107693650 coding upstream 528973 24216510 ~ 24220719 (+)
AMCG00013197 NA coding upstream 557210 24124906 ~ 24192482 (+)
AMCG00013195 NA coding upstream 633434 24022831 ~ 24116258 (+)
AMCG00013187 NA coding upstream 765267 23973082 ~ 23984425 (+)
AMCG00013188 NA coding upstream 787735 23952046 ~ 23961957 (+)
AMCG00013200 NA coding downstream 24542 24774798 ~ 24777606 (+)
AMCG00013203 NA coding downstream 38369 24788625 ~ 24793416 (+)
AMCG00013202 NA coding downstream 48071 24798327 ~ 24799733 (+)
AMCG00013209 NA coding downstream 204715 24954971 ~ 24957583 (+)
AMCG00013215 NA coding downstream 223461 24973717 ~ 24991262 (+)
G42845 NA non-coding upstream 3938 24745523 ~ 24745754 (+)
G42816 NA non-coding upstream 338648 24410842 ~ 24411044 (+)
G42780 NA non-coding upstream 741842 24007353 ~ 24007850 (+)
G42779 sstr5,LOC104918336,LOC102219310,LOC102291375 non-coding upstream 745805 23997794 ~ 24003887 (+)
G42705 NA non-coding upstream 918292 23784408 ~ 23831400 (+)
G42848 NA non-coding downstream 52 24750308 ~ 24750565 (+)
G42849 NA non-coding downstream 551 24750807 ~ 24751467 (+)
G42850 NA non-coding downstream 1551 24751807 ~ 24752082 (+)
G42855 NA non-coding downstream 17000 24767256 ~ 24767458 (+)
G42856 NA non-coding downstream 17262 24767518 ~ 24767781 (+)
G42846 NA other upstream 297 24747492 ~ 24749395 (+)
AMCG00013198 NA other upstream 417838 24241269 ~ 24331854 (+)
AMCG00013147 NA other upstream 2488876 22248497 ~ 22260816 (+)
G42453 NA other upstream 2503902 22242429 ~ 22245790 (+)
G42344 LOC108412647 other upstream 3262884 21426660 ~ 21486808 (+)
G42858 NA other downstream 18168 24768424 ~ 24770148 (+)
AMCG00013236 NA other downstream 763097 25513353 ~ 25521681 (+)
AMCG00013248 NA other downstream 1043149 25793405 ~ 25798013 (+)
AMCG00013251 NA other downstream 1402980 26153236 ~ 26161139 (+)
AMCG00013255 NA other downstream 1504718 26254974 ~ 26258982 (+)

Expression


Co-expression Network