G42849


Basic Information

Item Value
gene id G42849
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 24750807 ~ 24751467 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU53410
CATGCTTTCCAAAAAATTCAGGAATTATATAGCCTTAAATACTTACTACGTTCAGTAAATTCTGTAAGACACTGAAATTTCCATTGAGGTGTAGAGTACCCTTGACTTCCATGATGACCTGAGCAGATTCCACAGCCAGATGGAGTTCATGATACTGCTGAATTTGCTGGATTCTAATTGTAATCCACCGTTTGTTGTCAGAGGAGTCTATCTTGCACATGATATTAAGATCTTTCTCCAGATCTTCATAGCGGTCCTTGTAAACTTCAAAAGTCTCATCCACCTCTTCTAACGTCAGACTGCCTTTCTTGAGTGTTTCATAGATCCTGGTATATTTCTTATAACATGGCTCAAATATTTCCTCACTTATTACATCAGGTGTTGCCAGCAGATCAGGATCTGGTTTTGCTTCTCCTGTAGCATCATCCATTACGACCAACTCTTTGGCTTGATTTTCCCAGCAAATTTGGAAAATGTAGCTGTCTTTAAATGTGTGCAGAGCTTCAGCCATCCTTCGAGTCTGGTTATCAAGCTGAAAATACGTGACCTCCCCTGCCTCGTCAGAAGATATCTCATCCAGCTGGTGCACAACCATGAACTCATCCAAGTTCTTCATCTGAATGTTGCTTTGGCATTTTGATTCCAGGTCATCTATGTCAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU53410 True 661 lncRNA 0.41 1 24750807 24751467

Neighbor

gene id symbol gene type direction distance location
AMCG00013196 slc39a11,LOC107693650 coding upstream 530088 24216510 ~ 24220719 (+)
AMCG00013197 NA coding upstream 558325 24124906 ~ 24192482 (+)
AMCG00013195 NA coding upstream 634549 24022831 ~ 24116258 (+)
AMCG00013187 NA coding upstream 766382 23973082 ~ 23984425 (+)
AMCG00013188 NA coding upstream 788850 23952046 ~ 23961957 (+)
AMCG00013200 NA coding downstream 23331 24774798 ~ 24777606 (+)
AMCG00013203 NA coding downstream 37158 24788625 ~ 24793416 (+)
AMCG00013202 NA coding downstream 46860 24798327 ~ 24799733 (+)
AMCG00013209 NA coding downstream 203504 24954971 ~ 24957583 (+)
AMCG00013215 NA coding downstream 222250 24973717 ~ 24991262 (+)
G42848 NA non-coding upstream 242 24750308 ~ 24750565 (+)
G42847 rnf213,LOC107701915,LOC107556605 non-coding upstream 551 24749692 ~ 24750256 (+)
G42845 NA non-coding upstream 5053 24745523 ~ 24745754 (+)
G42816 NA non-coding upstream 339763 24410842 ~ 24411044 (+)
G42780 NA non-coding upstream 742957 24007353 ~ 24007850 (+)
G42850 NA non-coding downstream 340 24751807 ~ 24752082 (+)
G42855 NA non-coding downstream 15789 24767256 ~ 24767458 (+)
G42856 NA non-coding downstream 16051 24767518 ~ 24767781 (+)
G42857 NA non-coding downstream 16548 24768015 ~ 24768240 (+)
G42906 NA non-coding downstream 128297 24879764 ~ 24882058 (+)
G42846 NA other upstream 1412 24747492 ~ 24749395 (+)
AMCG00013198 NA other upstream 418953 24241269 ~ 24331854 (+)
AMCG00013147 NA other upstream 2489991 22248497 ~ 22260816 (+)
G42453 NA other upstream 2505017 22242429 ~ 22245790 (+)
G42344 LOC108412647 other upstream 3263999 21426660 ~ 21486808 (+)
G42858 NA other downstream 16957 24768424 ~ 24770148 (+)
AMCG00013236 NA other downstream 761886 25513353 ~ 25521681 (+)
AMCG00013248 NA other downstream 1041938 25793405 ~ 25798013 (+)
AMCG00013251 NA other downstream 1401769 26153236 ~ 26161139 (+)
AMCG00013255 NA other downstream 1503507 26254974 ~ 26258982 (+)

Expression


Co-expression Network