G42850


Basic Information

Item Value
gene id G42850
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 24751807 ~ 24752082 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU53411
GACATATTCATGGATTTTCCGGCACATTGTGAGGAGGCTTTCAACCAGTTTCTTTTCATGCATGATGGCTATCACCTCGTCTTCGCGCCACTGGAGAACTCTTTTCATGGCTGCGGTGTCCTTGGAGTGCTCATTATCAGACAGGCCTTCTATGGAGACAAACTAACttcaattctatacttaaaacatttccataGAAAATGTCATATTTCTGTAAGGATACTAGTTTGCTGTAGGCTAATTGCtgttccaatatatatatacactcacctaaag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU53411 True 276 lncRNA 0.40 1 24751807 24752082

Neighbor

gene id symbol gene type direction distance location
AMCG00013196 slc39a11,LOC107693650 coding upstream 531088 24216510 ~ 24220719 (+)
AMCG00013197 NA coding upstream 559325 24124906 ~ 24192482 (+)
AMCG00013195 NA coding upstream 635549 24022831 ~ 24116258 (+)
AMCG00013187 NA coding upstream 767382 23973082 ~ 23984425 (+)
AMCG00013188 NA coding upstream 789850 23952046 ~ 23961957 (+)
AMCG00013200 NA coding downstream 22716 24774798 ~ 24777606 (+)
AMCG00013203 NA coding downstream 36543 24788625 ~ 24793416 (+)
AMCG00013202 NA coding downstream 46245 24798327 ~ 24799733 (+)
AMCG00013209 NA coding downstream 202889 24954971 ~ 24957583 (+)
AMCG00013215 NA coding downstream 221635 24973717 ~ 24991262 (+)
G42849 NA non-coding upstream 340 24750807 ~ 24751467 (+)
G42848 NA non-coding upstream 1242 24750308 ~ 24750565 (+)
G42847 rnf213,LOC107701915,LOC107556605 non-coding upstream 1551 24749692 ~ 24750256 (+)
G42845 NA non-coding upstream 6053 24745523 ~ 24745754 (+)
G42816 NA non-coding upstream 340763 24410842 ~ 24411044 (+)
G42855 NA non-coding downstream 15174 24767256 ~ 24767458 (+)
G42856 NA non-coding downstream 15436 24767518 ~ 24767781 (+)
G42857 NA non-coding downstream 15933 24768015 ~ 24768240 (+)
G42906 NA non-coding downstream 127682 24879764 ~ 24882058 (+)
G42922 NA non-coding downstream 172709 24924791 ~ 24926745 (+)
G42846 NA other upstream 2412 24747492 ~ 24749395 (+)
AMCG00013198 NA other upstream 419953 24241269 ~ 24331854 (+)
AMCG00013147 NA other upstream 2490991 22248497 ~ 22260816 (+)
G42453 NA other upstream 2506017 22242429 ~ 22245790 (+)
G42344 LOC108412647 other upstream 3264999 21426660 ~ 21486808 (+)
G42858 NA other downstream 16342 24768424 ~ 24770148 (+)
AMCG00013236 NA other downstream 761271 25513353 ~ 25521681 (+)
AMCG00013248 NA other downstream 1041323 25793405 ~ 25798013 (+)
AMCG00013251 NA other downstream 1401154 26153236 ~ 26161139 (+)
AMCG00013255 NA other downstream 1502892 26254974 ~ 26258982 (+)

Expression


Co-expression Network