G42856


Basic Information

Item Value
gene id G42856
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 24767518 ~ 24767781 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU53417
ttcacattttccatttaccacactgttcacacacaaatactacAAACTTACCGAGTCACTTTCATTGTAACTGCATCAGTGTCCCAAGAGCCAATTCGTTCTCCTGCTCTCAGCGAAACAATATCCTTGCTTGGGTCTAATTTAAAGTCTTTAGAGAGGACAGCATGGAAGTAAACAGTCAGTCTGTCACTTACTGGGATATGCATGGATTCTGGTGAACTACAAAAgagtgaaacaaaataaatgtttgtaggtttcaaaaat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU53417 True 264 lncRNA 0.38 1 24767518 24767781

Neighbor

gene id symbol gene type direction distance location
AMCG00013196 slc39a11,LOC107693650 coding upstream 546799 24216510 ~ 24220719 (+)
AMCG00013197 NA coding upstream 575036 24124906 ~ 24192482 (+)
AMCG00013195 NA coding upstream 651260 24022831 ~ 24116258 (+)
AMCG00013187 NA coding upstream 783093 23973082 ~ 23984425 (+)
AMCG00013188 NA coding upstream 805561 23952046 ~ 23961957 (+)
AMCG00013200 NA coding downstream 7017 24774798 ~ 24777606 (+)
AMCG00013203 NA coding downstream 20844 24788625 ~ 24793416 (+)
AMCG00013202 NA coding downstream 30546 24798327 ~ 24799733 (+)
AMCG00013209 NA coding downstream 187190 24954971 ~ 24957583 (+)
AMCG00013215 NA coding downstream 205936 24973717 ~ 24991262 (+)
G42855 NA non-coding upstream 60 24767256 ~ 24767458 (+)
G42850 NA non-coding upstream 15436 24751807 ~ 24752082 (+)
G42849 NA non-coding upstream 16051 24750807 ~ 24751467 (+)
G42848 NA non-coding upstream 16953 24750308 ~ 24750565 (+)
G42847 rnf213,LOC107701915,LOC107556605 non-coding upstream 17262 24749692 ~ 24750256 (+)
G42857 NA non-coding downstream 234 24768015 ~ 24768240 (+)
G42906 NA non-coding downstream 111983 24879764 ~ 24882058 (+)
G42922 NA non-coding downstream 157010 24924791 ~ 24926745 (+)
G42925 NA non-coding downstream 223674 24991455 ~ 25016366 (+)
G42950 NA non-coding downstream 321389 25089170 ~ 25376099 (+)
G42846 NA other upstream 18123 24747492 ~ 24749395 (+)
AMCG00013198 NA other upstream 435664 24241269 ~ 24331854 (+)
AMCG00013147 NA other upstream 2506702 22248497 ~ 22260816 (+)
G42453 NA other upstream 2521728 22242429 ~ 22245790 (+)
G42344 LOC108412647 other upstream 3280710 21426660 ~ 21486808 (+)
G42858 NA other downstream 643 24768424 ~ 24770148 (+)
AMCG00013236 NA other downstream 745572 25513353 ~ 25521681 (+)
AMCG00013248 NA other downstream 1025624 25793405 ~ 25798013 (+)
AMCG00013251 NA other downstream 1385455 26153236 ~ 26161139 (+)
AMCG00013255 NA other downstream 1487193 26254974 ~ 26258982 (+)

Expression


Co-expression Network