G42858


Basic Information

Item Value
gene id G42858
gene name NA
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 24768424 ~ 24770148 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU53419
ATGAGAAGACTAATATACATGATCTCAGACTTAAATGTTCCCTCAAAAAAGTACAATCATTCCATTACCTTTATCTTGTTCTGTTGAACAGATTCTTTTGCCTTATTGTGTCGAGGCGGCTGTTTTCCTTCTTGATTATCCTGTGAGCTGTTTTTTGATGTCTTCGTCACCTGCCTGGCTGGCTCAGGGATCTTAGTATTCTGATCAAGATTAGTCTGCTGCATGTTTGCTGCATCCTTCTGGCTCTTGACAAGTTCATAGTCAGCAGGCTTTGCCTGGTCTTGATCCATTTTGTCTGCATTTTCCATAACTTTTTCTGAGGATTTCTGGGTCTGGCACATTTTTGAATCCGGAGAAGAAGCAGTCCCTGCCACTGAAGTTTCTCCTGAGGAATGCTGGCAAGGACGGGCAGCGCTGATTTCATCTGCCTTCTGCTCAGGAGCTACTTTCATGTCTTGTGGTTGTGTACTGTTCTCCACCATATCACCAGCACCTACTGTCAGATTTTCATCAGGAGAATGTTTGCAGGAATTAGTATCCTGAGAAACTTCATGCGCCATTATAGGTCGATTGTAATTATCACTGTCCTGCAGCGAAGCCGGTGTGCTATCCATTGCATTGGATGTGCTCTCCTCGTCAGATGAAAGGGATTCTTCCACCATTTCCATGTCAACCAGTGAGATGTCAGAAAGCTCCGAAGTCATCTGATCAGAGTCCAAAGATGAAGGCCCTTCATTGTCATTTGGCTTCTTCTtgctcttcttctttttctttctctTTTTTTTTCTGGTTGCCTTTGTTATCCTCATTGGGTCGTTTATGTTCCTTCGGCTGCTCTGAACAAGCAGCAGCCGACTCGTCCAGTGATGACATCTCAGTGTCTGTCTTCAGCTCAGCTCCTCCTTCCATTTCAACTGCAATCGCTGATAGAGGTTTGTCTGTGAAGGTAGGAAATGCATTGACTCAGCTCTGTCCTAAGCTCATGTCAAAAATTCTCCAGCCTTCACCTTCATCCAGTGTAAAACTCTCTCTTACACTAGGGTCAGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU53419 True 1047 TUCP 0.44 2 24768424 24770148

Neighbor

gene id symbol gene type direction distance location
AMCG00013196 slc39a11,LOC107693650 coding upstream 547705 24216510 ~ 24220719 (+)
AMCG00013197 NA coding upstream 575942 24124906 ~ 24192482 (+)
AMCG00013195 NA coding upstream 652166 24022831 ~ 24116258 (+)
AMCG00013187 NA coding upstream 783999 23973082 ~ 23984425 (+)
AMCG00013188 NA coding upstream 806467 23952046 ~ 23961957 (+)
AMCG00013200 NA coding downstream 4650 24774798 ~ 24777606 (+)
AMCG00013203 NA coding downstream 18477 24788625 ~ 24793416 (+)
AMCG00013202 NA coding downstream 28179 24798327 ~ 24799733 (+)
AMCG00013209 NA coding downstream 184823 24954971 ~ 24957583 (+)
AMCG00013215 NA coding downstream 203569 24973717 ~ 24991262 (+)
G42857 NA non-coding upstream 184 24768015 ~ 24768240 (+)
G42856 NA non-coding upstream 643 24767518 ~ 24767781 (+)
G42855 NA non-coding upstream 966 24767256 ~ 24767458 (+)
G42850 NA non-coding upstream 16342 24751807 ~ 24752082 (+)
G42849 NA non-coding upstream 16957 24750807 ~ 24751467 (+)
G42906 NA non-coding downstream 109616 24879764 ~ 24882058 (+)
G42922 NA non-coding downstream 154643 24924791 ~ 24926745 (+)
G42925 NA non-coding downstream 221307 24991455 ~ 25016366 (+)
G42950 NA non-coding downstream 319022 25089170 ~ 25376099 (+)
G43062 NA non-coding downstream 738043 25508191 ~ 25511347 (+)
G42846 NA other upstream 19029 24747492 ~ 24749395 (+)
AMCG00013198 NA other upstream 436570 24241269 ~ 24331854 (+)
AMCG00013147 NA other upstream 2507608 22248497 ~ 22260816 (+)
G42453 NA other upstream 2522634 22242429 ~ 22245790 (+)
G42344 LOC108412647 other upstream 3281616 21426660 ~ 21486808 (+)
AMCG00013236 NA other downstream 743205 25513353 ~ 25521681 (+)
AMCG00013248 NA other downstream 1023257 25793405 ~ 25798013 (+)
AMCG00013251 NA other downstream 1383088 26153236 ~ 26161139 (+)
AMCG00013255 NA other downstream 1484826 26254974 ~ 26258982 (+)
AMCG00013257 LOC106612075,LOC107560953 other downstream 1597647 26367795 ~ 26396705 (+)

Expression


Co-expression Network