G42906


Basic Information

Item Value
gene id G42906
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 24879764 ~ 24882058 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU53473
TGGTTGttatatatgaatacatcaTATTACTTATCTACAGATTtcaaaaaaagtacaataatttagttaataaatacttacaattaaatggacttttatttttatgtatttttttcatacaatGTACTGTGATATCATAATTTATTACACCccagacagaaaaataacaaaaacagattttattatttaccatttattCATAAAACTCACTACTTTTTTTATAGCTTTAATTTCTCACTTTACACTTTTGAGACACATAAACCTATTCTGAAGAGCAAGATATTAAAACTTGCCAAATCATATACTTACCAGTTGACACAGacgtgttttgatttaaaaataaaaaatagccgTCTAAAGCTTAGATTTTTGTCACCTAAGTGCTGATAAActatttcttctttaaaatacatatattacatcTCACTTGTAACCAAAAAGGTGTAATAAAGTAAAAGAAGACTGCAGAGGTACACACAACAGTGCTGTTAagataaatatcaaatattatcaataaaaagggcttagattttcttttcttttttttttttttttttttctttttttttttttaaacaagttgGGGGTGATGTTAGTGGATTTACCCAAAGCATGAAGAACTTCACAGCATACCTATGTCCTAGCAATTGGTCTAGCAGCAAGATAGGaagtttataatttaaactaACAACAAACACTGCGTGaagttttcaaaatgcagtgagTAAGCCTTTTCCCCATTTGCTCCCCTGATAAAAAAGGGTGTCTGATCATTTTAGTCCCCCACTTATCTTATAACCACTTTCCTTCCTCCAGGTATGTCTATAGGCTACACATTTTTGATTcagataatttgtttttcagtctaGATAACAAGTAATAACCCactgtttgaaaaataatagaTAAGCCACTGGATCCTAAAAGGAGTCCACCTGGTTCACAccagaaaacataaaactgtGCAAACCCTTCAGTGTGTAAACTCTGACAGACTATCCCAATGTGGCTGCCACCCAGACACGTATTTtggggtgttttatttttttattttctttcatttctgatATGCAAATACACAGTATTGAATCAATATCAAAAGCCGAACTAGAAACTGAAGAAATTCATTTCTCTTGTGAAAAGAGTTTTCAGATATAATTGGGATGTGGGAAATATCCATGTTGTGCCACTCATTTTGGTTTCTACACCCATTTGGTTTATCTCCCCTTGTAAGGACCAGTTCTGACAATAAGGTGACCGCAAAAATGACCAATGATAGACTGCTATAATGTGCACGGAAGAGTTATTTCACACGTGCACATACaaagaacaattaaaacaaagaactgCTATTTTACAGCAGCGTGATTTACTTAAGAAGTGTGTCAGTCCAATTGAAAAGCGCACAAGACTCAATGTACGAGATGTGCTGACCAGGTTTTATCTGTGATCCGGGGAACACACGATGGAGATTCAGTTATCTTTTAGGAAGTCAGGCCTGAGGGTACCAACAGCAGccacaaatatttaaatcgGTCACAGAATGTTGGAACAGcttatacttttttccccccactgtttTCTCCATTTCCCATGCCTTAAGGGATTTAGGCACTTCAGATTAGAAATTGCGGTCTTGGATGGAAGGGGGAGGGCTAATTTGTGCTTGGATTCATTGTAGAATCAGGTTTTTCCTTTGCTGATCAAGTCTAGGCTTTACAAGTCAGGCAAACTGAAccaaatggggaaaaaaacaaaccacaactaTGTAAAAATtgctgcaacaacaaaaacagtgttgATTTGTCAGCCTAtatcataataaatgtatagatgTGCAGCGAAAGGAAGGAAAGGGTTATTATATGCTTGGTGAAACTGAGGGATAAGGGATTCAACAAGAATCATAGATAGATATGCACTCTGTATAAAACTATTGACTTTTGTCACTTTACAACAATACTACTCATAGCTCAGAGCTCTAGCCTCTCACTGCAGTCCACTGagttgcatatttaaaaaggttCACTTTTGCACAACAGTCACCACGACGTACACAAGTACGCCACACGTCTCCAGAAGAGaaatgaatgacacaaggcGCTTGCTAAAACAAGCACTTAAAAACCTTTACACATTGTTCACAGAGGGTAACACTACAGGACCGCCACAGCAAAAAGAGAACATTAACATTGAATCAAAGCAATGCCGAGAATGAGGATCAAATCCATTAGAACAGTTTCACAGATAACCAGTCAAATAAAGATTTCTTGTTGATttcttaagaaaaaacaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU53473 True 2295 lncRNA 0.35 1 24879764 24882058

Neighbor

gene id symbol gene type direction distance location
AMCG00013202 NA coding upstream 80031 24798327 ~ 24799733 (+)
AMCG00013203 NA coding upstream 86348 24788625 ~ 24793416 (+)
AMCG00013200 NA coding upstream 102158 24774798 ~ 24777606 (+)
AMCG00013196 slc39a11,LOC107693650 coding upstream 659045 24216510 ~ 24220719 (+)
AMCG00013197 NA coding upstream 687282 24124906 ~ 24192482 (+)
AMCG00013209 NA coding downstream 72913 24954971 ~ 24957583 (+)
AMCG00013215 NA coding downstream 91659 24973717 ~ 24991262 (+)
AMCG00013214 NA coding downstream 163324 25045382 ~ 25053636 (+)
AMCG00013213 NA coding downstream 197618 25079676 ~ 25081286 (+)
AMCG00013219 NA coding downstream 239518 25121576 ~ 25133716 (+)
G42857 NA non-coding upstream 111524 24768015 ~ 24768240 (+)
G42856 NA non-coding upstream 111983 24767518 ~ 24767781 (+)
G42855 NA non-coding upstream 112306 24767256 ~ 24767458 (+)
G42850 NA non-coding upstream 127682 24751807 ~ 24752082 (+)
G42849 NA non-coding upstream 128297 24750807 ~ 24751467 (+)
G42922 NA non-coding downstream 42733 24924791 ~ 24926745 (+)
G42925 NA non-coding downstream 109397 24991455 ~ 25016366 (+)
G42950 NA non-coding downstream 207112 25089170 ~ 25376099 (+)
G43062 NA non-coding downstream 626133 25508191 ~ 25511347 (+)
G43063 NA non-coding downstream 630150 25512208 ~ 25512901 (+)
G42858 NA other upstream 109616 24768424 ~ 24770148 (+)
G42846 NA other upstream 130369 24747492 ~ 24749395 (+)
AMCG00013198 NA other upstream 547910 24241269 ~ 24331854 (+)
AMCG00013147 NA other upstream 2618948 22248497 ~ 22260816 (+)
G42453 NA other upstream 2633974 22242429 ~ 22245790 (+)
AMCG00013236 NA other downstream 631295 25513353 ~ 25521681 (+)
AMCG00013248 NA other downstream 911347 25793405 ~ 25798013 (+)
AMCG00013251 NA other downstream 1271178 26153236 ~ 26161139 (+)
AMCG00013255 NA other downstream 1372916 26254974 ~ 26258982 (+)
AMCG00013257 LOC106612075,LOC107560953 other downstream 1485737 26367795 ~ 26396705 (+)

Expression


Co-expression Network