G42922


Basic Information

Item Value
gene id G42922
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 24924791 ~ 24926745 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU53494
GCGgtcaaaacaggaaaaaaataatcaaaaaaactaaaaatatttacaatttacaaagaATCACTTCTCTGTTTGAATAGCActtataaatatgatttacataataaaataaatatgtaaaattaccAAAGTAGCTtgagtttctttcttttttctgttaaaaaaatatgttacagaacaaaatacatttagtaataaccttttttttcctgctaGTTATGAAGTAgaagtcttttttatttatatatataaaaaattatatcaACCAACAATGAGGGACGTtctagtaaaaaacaaaatcaaaaatccAGCGtgtcttcatttatttgtatattgaaAGATCTCTTGATGAGAGGAGGGTTGCGAACCTTGTTAAGGACCCTGGGCAGTTCCTCATTCTGGGCAGCACACTgttacaatacagcacagtccAAACGCATCAACTAACCTAATTCACTATATTGACATTTGAATTATACTGAAAGATACCTGGAACTCCAAACAACCAGTCATCaactttgtaaaaataataatagtaataccaataataataaaaagataaagtaagcatttaataaagttttttttaggAAGTCAAAACTCAGAACATTCATTAATAGCTAGTTCCTGTTAGTTTTCCAGAGGAGAGTATACTAACATACAGCAATTTTGTGCTCAGAAAAATTATCTGAACTACAACAGTGGAAAGATGCTAAAAACCTTGAGGTTAATGCACTATAAACATCACTTATAAACTCATTTTAGTCACTAACAATGTacacttttaaagaaaaaacatggtctggttataaatgtttaaatacctATTAATGGTTTGTGTTACTCCTTTATACACTGctgctatttttttaaatctttgacTTCTATAGTTTTCCACATTTTCAGGATGGACTGGCCTTGTTGGGAATTGCTGTGGTTCCAGTGGTCTTGGTCCATTTTTGACCAGTAGGTCTAGCATTAGAGTAGAATTTCAGGGGCACAGACTCTGATTTATGGCTGATTCAAAATAACTGTACACTTCTAAAATGGAAGTCAGTCGGGGGTCTTAATAGCTTCAGACTCCACAGTGTATCACCCTGGAAGGAGGTGAAAAGCATCAGAATCACACCATCAACCCACCAGTCTCCCCATCTGAATGGAAACCAACATGAGCCAAGAGCTCCACCTGAAGGCTTTATCATGACATACAGAATCTGTTTCCTTGCTACTGCCATTCGTCTTTCAGTTTGGTATTGTGTGATgtaggaaaaacacatttaggaAGCACATTTAACTGTGTAGTGCTGTTGTGTTGATGCCTGTCGAGCTTTTGGTCAACTAGGCCACTCTGAAACTTCATTGTTCTTTCTTCACAGAGCCCATGAGATCACCTTTGCAGAGGTGGGCTCCATGactaaaaacagaacagaatggCTGATAACATCAGGATGGTATTGACTTCTCTGGGAATTCCAGTCAGCCATTTCAACagacattttgacatttgtgGACTTACAGCACAGAGGAAGACTAAAGTTTGGAAGTGTGATGCCATGCTATGTCTCCTATAGGTTTGCCTAGAGGAGGAAGGCCCTGTTCTCATCTCTGTAATTTCCAGAGTGGTGTAGCCAACTGTAGGCTAAGCTGCCAGTATGTGTGGGTTTTGTACAAAGGTCATGTTGGGGTTGGCTGGTCGCTGTGATTCTGAGCTTTACTAAACCTCCCTCATCATTACCCTTGGTCAGGGTAAAGTGTGGCCAATATGCCCATCTTGGAGACACGTGCCCTTTGGTCCCTTCTTCCCTTGATGAAAAGACGGACGATCCAGTGATTTTCCCACCaagtttgtctgtgtgtatttcattaaaaagaaaaaaaaacgaggTCTGAGGAATAAAAACACTTTGGCCCACAGTGGACATGGTTTTCTTTTCCACTGACTCTCGGAAGTCATC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU53494 True 1955 lncRNA 0.37 1 24924791 24926745

Neighbor

gene id symbol gene type direction distance location
AMCG00013202 NA coding upstream 125058 24798327 ~ 24799733 (+)
AMCG00013203 NA coding upstream 131375 24788625 ~ 24793416 (+)
AMCG00013200 NA coding upstream 147185 24774798 ~ 24777606 (+)
AMCG00013196 slc39a11,LOC107693650 coding upstream 704072 24216510 ~ 24220719 (+)
AMCG00013197 NA coding upstream 732309 24124906 ~ 24192482 (+)
AMCG00013209 NA coding downstream 28226 24954971 ~ 24957583 (+)
AMCG00013215 NA coding downstream 46972 24973717 ~ 24991262 (+)
AMCG00013214 NA coding downstream 118637 25045382 ~ 25053636 (+)
AMCG00013213 NA coding downstream 152931 25079676 ~ 25081286 (+)
AMCG00013219 NA coding downstream 194831 25121576 ~ 25133716 (+)
G42906 NA non-coding upstream 42733 24879764 ~ 24882058 (+)
G42857 NA non-coding upstream 156551 24768015 ~ 24768240 (+)
G42856 NA non-coding upstream 157010 24767518 ~ 24767781 (+)
G42855 NA non-coding upstream 157333 24767256 ~ 24767458 (+)
G42850 NA non-coding upstream 172709 24751807 ~ 24752082 (+)
G42925 NA non-coding downstream 64710 24991455 ~ 25016366 (+)
G42950 NA non-coding downstream 162425 25089170 ~ 25376099 (+)
G43062 NA non-coding downstream 581446 25508191 ~ 25511347 (+)
G43063 NA non-coding downstream 585463 25512208 ~ 25512901 (+)
G43064 NA non-coding downstream 595733 25522478 ~ 25524992 (+)
G42858 NA other upstream 154643 24768424 ~ 24770148 (+)
G42846 NA other upstream 175396 24747492 ~ 24749395 (+)
AMCG00013198 NA other upstream 592937 24241269 ~ 24331854 (+)
AMCG00013147 NA other upstream 2663975 22248497 ~ 22260816 (+)
G42453 NA other upstream 2679001 22242429 ~ 22245790 (+)
AMCG00013236 NA other downstream 586608 25513353 ~ 25521681 (+)
AMCG00013248 NA other downstream 866660 25793405 ~ 25798013 (+)
AMCG00013251 NA other downstream 1226491 26153236 ~ 26161139 (+)
AMCG00013255 NA other downstream 1328229 26254974 ~ 26258982 (+)
AMCG00013257 LOC106612075,LOC107560953 other downstream 1441050 26367795 ~ 26396705 (+)

Expression


Co-expression Network