G42950


Basic Information

Item Value
gene id G42950
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 25089170 ~ 25376099 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU53533
TCGTCTCATAGTCTGAGTCTGGGTGTGAGCAGCGGCCGTGTGTCCCAGGAGCGGTTAGAGACATTTCTGTAAAGAGCAGAGCCTGTGCTGTAAGACGAGGGACTTAGACAGAAAGCAGATTTTCGGCCCGTCAGAAAAACTGGTGCAATTCCAGGACTGATCTACACAAAAACACTATCCACTCGAAAGTGTAGGTAGATTAAATCGACTTTTCCTGGTGTTAAGAAAGATGCTTCTGTCAGAATCGAGTTCCCACAATGTTGGTTCCTCTGGGGGGAAGTGGacaaaaaataacatctcaaattaacacttttttttaaaaatttacTTCTTTTTTTATAGTGCATATTGTACAAATTACCAGTGCATCAGTAGCTATCATTGGTGCTGTACAACAGGAAAAGCAGCCATTTagacacaaaatatattcaggTTAAGACATAATGCAGTGGCTTCAGGTGACTGTAGCACACTAGCTTCGACTAAAACAGGTTGGTTTAAGTGATATTTGTTTCTCAGGCATAATTGCAGTCTGCGGATTCATATGAACACCATGAACTGTGTGCTTTTAGAAACCTCTCCTGATAATAAACCAATGTAGAGCATTCACCAATCAACAAGTATCATTCCCTCAGTTAACAACCAACTCCAATTGTCTGTAATACCACAGGGCTATTCCAagagtgattttttttccacactgcGTCAGCAAACATCAAACACCCAGTGCACCAATCTCAGGTTTTGTGTTTACTCTCTGTATGactgaacatggaaaaacaaagaaagaaagaaaactaccTATTTTGGCCTGGTTTGTCAAACTCTTGGCTGGGTGAACACGGACACATCAGCACTACATAACAGAGCAGAATGACTTTGAATGTCCAGCAGTACAGCAGATGACTGACATGCAGCAAAGGCAAAAGTCACAGCAGTAAAGGAAATGCATAAACACGTAACCTCAGTGGtgtaccatttaaaatattgaggTCTGAGCTACGATAAAGTGTAACAGTGCCACaacatggttttcattttaaatgtaattttttgtttgtttgataatAGGTATTCTGCAGAAACAACACAGCAGTTTTATACAATTCCCAGGCTGTTACTCAATACTGTAAGCTTTTTCCTGTCCTGTCTGCTTTTGTTGCTGTAGCTGTGAGGGAGTGTCAGCTTGGAGGACTCACAGTAGAGAGAGGTCCTTGCTCGTGGACGCCTGCAGCTCTGTTGGGTCATGTCTCAACTTGCTTAATAAGGAGTCTTTCTCATTCTGTATTAGATGTTAAGCTTACTTTTAATAAACAACGTCTGACAATCTGATTATGTAAAATGCTTGCTTGTTTTGT
>TU53534
TCGTCTCATAGTCTGAGTCTGGGTGTGAGCAGCGGCCGTGTGTCCCAGGAGCGGTTAGAGACATTTCTGTAAAGAGCAGAGCCTGTGCTGTAAGACGAGGGACTTAGACAGAAAGCAGATTTTCGGCCCGTCAGAAAAACTGGTGCAATTCCAGGACTGATCTACACAAAAACACTATCCACTCGAAAGTGTAGGTAGATTAAATCGACTTTTCCTGGTGTTAAGAAAGATGCTTCTGTCAGAATCGAGTTCCCACAATGTTGGTTCCTCTGGGGGGAAGTGGTGAGTATTTACAAAGAGTTTATCACTTTATTCCTTCATCTAATGTAGAATGTGTTGTCCACTGTAATCTTTCGATGGTAATCCTGCATTAATAGCTTTTgaagtgaatgtgttttttgccACAATATCTTGCAAGTATTGCCCCACCCAGGCACACAGATGTGAAATGCAACTGAAAATCCAGTTTTGAACTAGCCACATCTAATTCTCTTCCTCCTCAGTTTAAAACCGATTTGATGTGCAGACCCTTCTCCTTTAATAGTTTGTTGGCACCACATTGTACTCATACTTTTTCTAAAGTGCAGGGTCTCTCTCCCTTCTCAATGTTTTATGTGAAACGTAAGGGAAGAGGGAGCAATGTATTCGGCAAACAAAACCGCAACTCCGGTGTCAACAGCATTGAAGACCCTTTCAAGCCACTGGAAGTTTCCAAGTCTCCTGTAAAGAATCTGCAAGATGTACACGCGCTTCGGACTGGAGAGATCACTACGATATTTTAACATCAAACGCGGAAACAGTGAAGCTCTTGATCTGCTACTCTGGACATGATGTACGAAGGATCTGACACTTATTTCCTTGTCTTGTGAATGTTCGTGTGACATGAACTTCTCGTGAGTTTGCCGACCACTGGAAGCGGGTGTTgtattgtgctgtttttatgAACTGAACAAATGATCTTGCTctgttttttcaaaaatggagaTGGAATCCCCCTCCCACTGAAGCTCGTCCCTAACAGAGCGACGTCAAGCAGGAGACGAGACCTCGTCTGCGGCTGAGTTTGTCCTCCTTTTCCTGGTAATGCCTTCGCATTGATCCAAGCAGCGCTGAaacactgttgtgtgtgtgttacttgAGGTGCAGAAAACACTATGGAGAGAAATGCGACTCGTTTATGAGCTCAGATACATTGTTAATGGATGGTTGTTAGCAGGGATTCAGGACCTGCTGTCGGACTGACGGCAAGAAGACAGAACTGGACGGTAAAAGCGCGTTTGTCAATGTAACTACTGGAAGGAGTGCAGTTAGCAACACCACATCAGACAAAGTGAACTATTGCAACATTGCCGACAGAGAACTGAATGCTGCTGGAAAAGCAGGATTGCTCCTCTGTATGGGTAGTGTTCACTAGTCCTAGTGAGTCTTCTGACAGAGTTTAAGGGTAGCTGCTGTGTGGAAACTAAACTGTTCAGGTGATTGTCAGGTACTGGATTTTGGGTGATGCTTCTGTGCAGGTATTTACTTATGAatggcatatttattttaaatatatgtatgcattgttttttt
>TU53535
TCGTCTCATAGTCTGAGTCTGGGTGTGAGCAGCGGCCGTGTGTCCCAGGAGCGGTTAGAGACATTTCTGTAAAGAGCAGAGCCTGTGCTGTAAGACGAGGGACTTAGACAGAAAGCAGATTTTCGGCCCGTCAGAAAAACTGGTGCAATTCCAGGACTGATCTACACAAAAACACTATCCACTCGAAAGTGTAGGTAGATTAAATCGACTTTTCCTGGTGTTAAGAAAGATGCTTCTGTCAGAATCGAGTTCCCACAATGTTGGTTCCTCTGGGGGGAAGTGaTGGAATCCCCCTCCCACTGAAGCTCGTCCCTAACAGAGCGACGTCAAGCAGGAGACGAGACCTCGTCTGCGGCTGAGTTTGTCCTCCTTTTCCTGGTAATGCCTTCGCATTGATCCAAGCAGCGCTGAaacactgttgtgtgtgtgttacttgAGGTGCAGAAAACACTATGGAGAGAAATGCGACTCGTTTATGAGCTCAGATACATTGTTAATGGATGGTTGTTAGCAGGGATTCAGGACCTGCTGTCGGACTGACGGCAAGAAGACAGAACTGGACGGTAAAAGCGCGTTTGTCN
>TU53536
TCGTCTCATAGTCTGAGTCTGGGTGTGAGCAGCGGCCGTGTGTCCCAGGAGCGGTTAGAGACATTTCTGTAAAGAGCAGAGCCTGTGCTGTAAGACGAGGGACTTAGACAGAAAGCAGATTTTCGGCCCGTCAGAAAAACTGGTGCAATTCCAGGACTGATCTACACAAAAACACTATCCACTCGAAAGTGTAGGTAGATTAAATCGACTTTTCCTGGTGTTAAGAAAGATGCTTCTGTCAGAATCGAGTTCCCACAATGTTGGTTCCTCTGGGGGGAAGTGGGAAGAGGGAGCAATGTATTCGGCAAACAAAACCGCAACTCCGGTGTCAACAGCATTGAAGACCCTTTCAAGCCACTGGAAGTTTCCAAGTCTCCTGTAAAGAATCTGCAAGATGTACACGCGCTTCGGACTGGAGAGATCACTACGATATTTTAACATCAAACGCGGAAACAGTGAAGCTCTTGATCTGCTACTCTGGACATGATGTACGAAGGATCTGACACTTATTTCCTTGTCTTGTGAATGTTCGTGTGACATGAACTTCTCGTGAGTTTGCCGACCACTGGAAGCGGGTGTTgtattgtgctgtttttatgAACTGAACAAATGATCTTGCTctgttttttcaaaaatggagaTGGAATCCCCCTCCCACTGAAGCTCGTCCCTAACAGAGCGACGTCAAGCAGGAGACGAGACCTCGTCTGCGGCTGAGTTTGTCCTCCTTTTCCTGGTAATGCCTTCGCATTGATCCAAGCAGCGCTGAaacactgttgtgtgtgtgttacttgAGGTGCAGAAAACACTATGGAGAGAAATGCGACTCGTTTATGAGCTCAGATACATTGTTAATGGATGGTTGTTAGCAGGGATTCAGGACCTGCTGTCGGACTGACGGCAAGAAGACAGAACTGGACGGTAAAAGCGCGTTTGTCAATGTAACTACTGGAAGGAGTGCAGTTAGCAACACCACATCAGACAAAGTGAACTATTGCAACATTGCCGACAGAGAACTGAATGCTGCTGGAAAAGCAGGATTGCTCCTCTGTATGGGTAGTGTTCACTAGTCCTAGTGAGTCTTCTGACAGAGTTTAAGGGTAGCTGCTGTGTGGAAACTAAACTGTTCAGGTGATTGTCAGGTACTGGATTTTGGGTGATGCTTCTGTGCAGGTATTTACTTATGAatggcatatttattttaaatatatgtatgcattgttttttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU53533 False 1358 lncRNA 0.40 3 25089170 25119808
TU53534 True 1572 lncRNA 0.44 3 25089170 25376099
TU53535 False 581 lncRNA 0.49 3 25089170 25091718
TU53536 False 1228 lncRNA 0.45 4 25089170 25376099

Neighbor

gene id symbol gene type direction distance location
AMCG00013213 NA coding upstream 7884 25079676 ~ 25081286 (+)
AMCG00013214 NA coding upstream 35534 25045382 ~ 25053636 (+)
AMCG00013215 NA coding upstream 97908 24973717 ~ 24991262 (+)
AMCG00013209 NA coding upstream 131587 24954971 ~ 24957583 (+)
AMCG00013202 NA coding upstream 289437 24798327 ~ 24799733 (+)
AMCG00013234 socs3 coding downstream 45562 25421661 ~ 25423984 (+)
AMCG00013232 NA coding downstream 103759 25479858 ~ 25485620 (+)
AMCG00013237 NA coding downstream 175496 25551595 ~ 25554794 (+)
AMCG00013243 slc38a10,LOC107749860 coding downstream 370566 25746665 ~ 25775438 (+)
AMCG00013244 LOC105892758 coding downstream 401813 25777912 ~ 25784972 (+)
G42925 NA non-coding upstream 72804 24991455 ~ 25016366 (+)
G42922 NA non-coding upstream 162425 24924791 ~ 24926745 (+)
G42906 NA non-coding upstream 207112 24879764 ~ 24882058 (+)
G42857 NA non-coding upstream 320930 24768015 ~ 24768240 (+)
G42856 NA non-coding upstream 321389 24767518 ~ 24767781 (+)
G43062 NA non-coding downstream 132092 25508191 ~ 25511347 (+)
G43063 NA non-coding downstream 136109 25512208 ~ 25512901 (+)
G43064 NA non-coding downstream 146379 25522478 ~ 25524992 (+)
G43078 NA non-coding downstream 212380 25588479 ~ 25592334 (+)
G43079 bahcc1,LOC107722173 non-coding downstream 218272 25594371 ~ 25594607 (+)
G42858 NA other upstream 319022 24768424 ~ 24770148 (+)
G42846 NA other upstream 339775 24747492 ~ 24749395 (+)
AMCG00013198 NA other upstream 757316 24241269 ~ 24331854 (+)
AMCG00013147 NA other upstream 2828354 22248497 ~ 22260816 (+)
G42453 NA other upstream 2843380 22242429 ~ 22245790 (+)
AMCG00013236 NA other downstream 137254 25513353 ~ 25521681 (+)
AMCG00013248 NA other downstream 417306 25793405 ~ 25798013 (+)
AMCG00013251 NA other downstream 777137 26153236 ~ 26161139 (+)
AMCG00013255 NA other downstream 878875 26254974 ~ 26258982 (+)
AMCG00013257 LOC106612075,LOC107560953 other downstream 991696 26367795 ~ 26396705 (+)

Expression


Co-expression Network