G43011


Basic Information

Item Value
gene id G43011
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 25136776 ~ 25139743 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU53637
ttaaattcatattttaatacatttaatcagtgAATTGGGCCAATGACACAAAGCATTCCagggcattttatttttttatttttttaaaataactagcATTAATGTTCAAATGTACATCAGgaatcaacacaaacaaaaaaatacagggaTGGGAGGGATGAAAGATTTTGAAATGGAACTAAAATCATCAGAAACAGTCCAAGCCAGTAAAGGTGCAAAGAGACACATTCATTTGCACTGTCAGCTTGATCTGTGGCTCTACCAGCGAATGAAGAACAAGTTCTTTGATGAAGGTATGTGGACTATAAGGAAGCCACATAGACTGACACAGAATTATAGGGAAATCAGAGGAGGAGCAGGAAGTGATGTTGATGGACAGCAGGAGGGTAGACAATCCCAAAGCAGGATCTCAGCAGGACAGTAGAGGGCACGGTGACACAGGGAGCAGCATCATAGGAGTATATCTCCAGCAACCTCTCTCTCTACCACAAAGACTGAAATTCAGCATTCCCGAAAACCCAGAGATTCACCCTTCGTAACAGGAGCCAGTCCAGAGCCTGGTCTAAGTTTTTCTGAATCAATCCCTCTGCATGtccataaatgtatttatgagaTTTGGAGCATTTGTGTcaaatgtacattaattaaCAGCAGTGTTGTTCATAAGAATAGGGATACTGTGTGTTGGGGCACAAAGCCAGCAAGGACTAAGATCCTCCCATGTTGTCACAGTTTGGTCATTTCCTTTGGTTTCCCAACATCCATGTACATTTCAGGCTCTTCTTCGAGCTGGGTGGTACACGCTTGGAAAGAGTTGGTTAATGCTGCATGGTATAACCACTGACCAGCTCCTGTGGCTCATTGTTCAGCTCTATCTCCTCTGTCTTCTTACTGGTGGGAAAAAGAGACTAATCAGACACACAAACTATGAAGTCATCCCTACTGAATTTCCAGCCCTGGAAACTTCATAAATGAACATGAGATTGACTATTtattaaagttacattttaagttgAGTCAAGAAGCAGAAAAGCAGAGGGCTGGCAGATATAAGGAATGCCATTGATAACTGTTTGGTTGTGTGATTGATTGATCGACAGTTTTAATACTTCTAATCTCATACTGCTTTTAATTGGACAATAAAAAGAGTTAAACAATGTGCTGagaattcacacacacatttcagtctCTTCATCTTTCTGAATATGGGACTGGGTTGGTAACATACaatgaaagttttaatttttaattacattttttatagaaCATGTATCAAAacttaaatagatttttttgttacattctgaaaagaaaacattcctgATAACTGATAGTGACACAATCTGAAATCACCTGAATCCTTGTGTGAGTGTGGGCACTTACAAATATGTCAGTACTCATTGAGATAGGAACTGTGGTCATTCAATCATAATAAGTGTCACATTGCACATTGTTTTATCGTCATGTGTAACACAGAGACCCTGACAGTCTTCAACTGCTCTGGGCCTGACTGAAATGTTACCAATGTCTCACTCTGCTCCGCTGTGTAGCCTGCTCTACACACTAGACGTGTCTTACTCACCAGGTCTGCCTGTCATTCTGTGATCTCCCTGGAAGACAGAAAAGCTCTGTTGCTGACCTCTGACCCACAGTGACAAGACTCACACAGCGATAACAACCCAACGGTGAGCAGGTGCCACATGGTTCGGTTCTAGTTCTCATGTTAATTAACACAGTTGTGACACTCTGCTGTAGGGCAGAATTAAACCACCCCCTCCTTCACCCATGTCTCTAATTAAACCTTGCCCTGACCCCAGGCACAATCCCCAAATGAGGAAACACTCAAATCTGAAACCATCTGCAACTACAGCCATTTTAGCCAACTAAGCTGTAGCTTTTCCCCAACTGGTGTTGAAGTTTACTACGGATACTTAGACTCAGGTGCCCCTTGTTCCAACACATCTTAACAGGCTTTCAAGACAGTAAGGTGGGGAATGGATAAACTCACTGTATAGAAACCCCCAGATACAGCATCCAGTCAGCAACAACGTCAGGAAGAGGTAGCAGACAAACACTAAAGCAATCACTTCAATGGAAATGTAGTTAAATTCTGTAAAGAGAATGGAATGATGTCTGTCAAAGAGAAAGTCAACACAGACCATAAAAGCACCACAGAGTGAATTAAAGGATGTTCAAATATAATGCCATATAAAACTGGTGGATTTCTGTAGTGCATTGCTACACAAATGAGATCAGTGCCATGGCAttcaaatatatcaatatacaattgcataaacaaaacaacatacatacatacatatatacataaaacaaatataaacttgTATTAACAGTAAgacctctttctctctctcgttctcttaCTTTCACTCCTTACATTTAAActataaagaaaagtaaagattATGGGGTACCTTTCATGTCAATAAAATAAGGTGAAGcctttattgtgtttgtgtcgTTAAAACTGTCGCTGACCTCGCAATGATAGAAGCCCGTGTTCTTTGGGTGAATAGAGGACAGGACGAGACATCTGCCTTGCTCCTGTAATTGGGAGCCATTTAAATACCAGGAATACCTGGGGTGGgatcctctctccacagagcaGTTGAGTATTATCCTTTCAATAATCCAATGTTCATTATGTATCTTTTGAGACTCCAGTGTAATTTGACCCTGCACTGGAA

Function

GO: NA

KEGG:

id description
ko04640 Hematopoietic cell lineage

RNA

RNA id representative length rna type GC content exon number start site end site
TU53637 True 2708 lncRNA 0.40 2 25136776 25139743

Neighbor

gene id symbol gene type direction distance location
AMCG00013224 NA coding downstream 25341 25099351 ~ 25111435 (-)
AMCG00013217 NA coding downstream 105003 25030591 ~ 25031773 (-)
AMCG00013211 notum1a,notum,LOC107732149 coding downstream 193330 24927137 ~ 24943446 (-)
AMCG00013212 NA coding downstream 215570 24920301 ~ 24921206 (-)
AMCG00013210 pycr1,LOC108236293,LOC103150509,LOC107572052,LOC103465458 coding downstream 224221 24907121 ~ 24912555 (-)
AMCG00013235 NA coding upstream 217937 25357680 ~ 25358501 (-)
AMCG00013233 NA coding upstream 245996 25385739 ~ 25418578 (-)
AMCG00013240 NA coding upstream 353634 25493377 ~ 25504516 (-)
AMCG00013238 NA coding upstream 368454 25508197 ~ 25512871 (-)
AMCG00013239 NA coding upstream 386899 25526642 ~ 25537475 (-)
G42800 NA non-coding downstream 914038 24220651 ~ 24222738 (-)
G42760 NA non-coding downstream 1219752 23912791 ~ 23917024 (-)
G42743 NA non-coding downstream 1234856 23901443 ~ 23901920 (-)
G42704 NA non-coding downstream 1357426 23778925 ~ 23779350 (-)
G42557 NA non-coding downstream 2320407 22816156 ~ 22816369 (-)
G43040 NA non-coding upstream 149727 25289470 ~ 25351738 (-)
G43042 NA non-coding upstream 226523 25366266 ~ 25424074 (-)
G43044 NA non-coding upstream 227855 25367598 ~ 25369063 (-)
G43072 NA non-coding upstream 379068 25518811 ~ 25519993 (-)
G43100 NA non-coding upstream 448171 25587914 ~ 25588261 (-)
G43001 NA other downstream 58532 25075393 ~ 25078244 (-)
AMCG00013216 NA other downstream 107772 25025738 ~ 25029004 (-)
AMCG00013204 mafg,LOC108241257,LOC106533856 other downstream 234348 24879641 ~ 24902428 (-)
G42749 NA other downstream 1289299 23844083 ~ 23847477 (-)
AMCG00013184 prkar1a,LOC107708993,LOC106606198 other downstream 1297630 23826609 ~ 23839146 (-)
AMCG00013223 tk1,kith,LOC102792372 other upstream 22414 25162157 ~ 25166773 (-)
G43070 NA other upstream 376337 25516080 ~ 25516963 (-)
AMCG00013241 NA other upstream 448744 25588487 ~ 25628252 (-)
AMCG00013245 NA other upstream 636631 25776374 ~ 25777723 (-)
AMCG00013246 NA other upstream 646400 25786143 ~ 25791759 (-)

Expression


Co-expression Network