G43040


Basic Information

Item Value
gene id G43040
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 25289470 ~ 25351738 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU53674
TGacattttaagctttttttatgttttatttattggtttgatCCAGTTCAGCGCTAGATTACATGGCAATGGCAGAAGTCTGAaatcaaaaagacaaaaacaggcACTATCGACTTCTCTTGATATTCCActacacaaacataaaatttaacaatataaaataaacagaaagaaaactatacatttaagtATATACAACTCTGATAAATAGACTAATACTGCTTAGTCatttaagattcttttttttcctcataatgtttgcttttctttagtAACCAGTGCATTGAAATGTGgaacttgttttaaaagaaaagctaaAAACGGTAACAAAATGGTATAAGACAGAACAGCTGTAGACCCACCTGAAAAAAAGTTTGCTTTACAACACATAAAGCTGCTACATGGGAATTCAATTCATTACAAAATCTCTGcggatgcattttttttttttttttaatgtatttaaggaACAGTGGTTTCTGGAaagaattcaatattttttgtttcaactaCAATATAAAGTAACATTTCCACGGTCAACAGGTGAAGCCAGGTGGATCACTTTGGattattgtgtttaataattCAAGGCAATGTAATGCACAGAGAACTGCAGAGGCTGGGGGATAGCCCCCAATCTGTATACATGTTTCCCAGCAGAAGAAATTATAGGTACTGTGTACATCACAATACCCCAGAGTTGTGTTTACACTGGATTTTAGGACTTGATTGTGGACTGCACTGCACAAAGGTGAAGCCATAGGAAAGATGCCAAGTGGGACCATggcatataaaaacacacagatggGGGACTGTCAAGCCAGATACACTAACACAAACATCTGGGTCTTCCTGCTGTATTGTCAGCAAAGGTACagatctatatataaaaacaaaccaacatagggaacagacaaaactgaaaacccAAAACTGAACCTCACGATATTGTTAAACACTTTGGGgaagaaaatgaatggatgaTATAGAAAAACGtggagaaaaatacaatctatCAAAGCACTTTGGAAACAGGGAGAAAAGCCAGATTGGCAAAGAATGGCTTCACCCTGCAGGCTGCCGGGAGCGGCACAGGGACGCTGAACATCTTCTTTCCACCCATAAAGCTCTCCAGCACCAATGTCTGTGTGAAAGAAAACCTTTCATCTGTCCAAATCAATGGGAGACAGGTATTTTTATTCAACTGCATCAGACTGAACAATTTCTGGCTCTTCGGAGACTAGAACAGAGAGTATGGCAGAAAACAAGCACctcaaacctttttttttttttttttaattaaatggtcTCTGTTGATCTGTAAAAACCTACATGTGTCCAGGAATATTCGCACTGATGCAAACCCAGTGCGGCCGGCCCACGAACTGTGACCAGGTACAGGGCTGACCATCTGACAGAGGGGTAAAAAGCACCTGACAGACTGTAAGAGGGAAGGAGTGGCGCAACACACCGTAGCGAGAACACGTTGCTTCATCCCCTCTCCATTTCTACTAAAGAGAGGTCCACAGCCACAAGCACACGAACCatgtcattattaattataaacagAGTTCTATTAAATCATAAAATCTCgtttatgcattttctttgtttgtacaCTGATATTCAAAACCCAACACCCTCCCCAGACAGTCAGTGAGTTAGTGAAGCAGTCTGTGCGGAGAAGCCCAAAATGGCACGGCCCCAGTGCTCAGTGTCAGGGGAAGGCACAATGATGAGTACATAGCTCAGGCAGAGATATGGAGGTGGCGGGGCTAGGGTAGGGTGGTGTGCTGAGGCAATGCAGAGTGACTGGTTTGGTTGGAGAACAGCGAGTCTTTATAAACCGTAGGTCCACATAGGCAGAACAAAACCTGGGAAGGTCACTGTTGCACTCTTTGCCATGATTGGCCGTTCTTCAGTTGTCTTCCTTTTGTGGTCGTCTTTGACTGGCCCACAGACATCATGCAAAAGACAGGAGAAGCACTTCACCACATTGTTTCTGGTGCAGCGTCCAGGGGTTGAATGTGGGCCGATGTTGGTGATCACTTTTGGTGGagatgcaaaattaaaaagacaggGAACAGACCGATTCTCATTTCCCCTCTGGCTCAACCTCTCCTGTTCTTTCATATACTGTCTAACAAATGTCCAGTTTAttctttttccatgtttttgacTCAGCAGCTTCCACAGAAGTGTGTGTAAGGTTTCACTGCACCTGGCTGAAGAGCAAAACCTTTCTCAAGCAGGAGACCGACCCCCTGAAGCACATTTTCACTTCTGCATTTTCAGTGTTAGTAACACTGCAGTTGCACCGACTAACAAGGGATCCCACATCTGCAACAGCATTTAAGAACAAATGTTTGGCATAGATGGCACATTCCCATTCAAAAGCTCTCTAAGAAGCTTTAAGGATCCTATTTAGGGTAAAATGCTTTACAGATATACACAATACACCTTGTCTTCTGCTCATTATGGTAGAAACACATCACTGGGGGCCCTGCGTTTACATATCCCAAATCATTCTCCAGAGAGTAAACTACAGGAAAATGTCCTGTAATTAACAGATtgcaaatgacaaacaaaagcacaattaacaaaagttacattaaacagaaattaaagtTCCTGAAGGTTTAAAATCCTTAAATTCACAATTGCttcttgggaaaaaaaaaaaaaaaaaacctgaaaaagttaaaataaggTATAGTCTCTAAAAAAAATAGATGCAGGTTGCCTATATCTATACACAATAAAGCACAATGAAGAAAGTCtctgatccttttttttttttctacattaagtTAGAAAATTTTGGTTGGGATTCCACATTCAGTCAGACCTGCTGAGTTGAGAATTGatgcgtgtgtgtgcgtgtgtgtgtgtgtgtgtatgtgtgcgtgtgcgcatgtgtgtgaaTGCCTGGAGGTCTGACTCTTTGATGTTGTGCAGTGCGATGCAGCTAGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU53674 True 2973 lncRNA 0.40 2 25289470 25351738

Neighbor

gene id symbol gene type direction distance location
AMCG00013224 NA coding downstream 178035 25099351 ~ 25111435 (-)
AMCG00013217 NA coding downstream 257697 25030591 ~ 25031773 (-)
AMCG00013211 notum1a,notum,LOC107732149 coding downstream 346024 24927137 ~ 24943446 (-)
AMCG00013212 NA coding downstream 368264 24920301 ~ 24921206 (-)
AMCG00013210 pycr1,LOC108236293,LOC103150509,LOC107572052,LOC103465458 coding downstream 376915 24907121 ~ 24912555 (-)
AMCG00013235 NA coding upstream 5942 25357680 ~ 25358501 (-)
AMCG00013233 NA coding upstream 34001 25385739 ~ 25418578 (-)
AMCG00013240 NA coding upstream 141639 25493377 ~ 25504516 (-)
AMCG00013238 NA coding upstream 156459 25508197 ~ 25512871 (-)
AMCG00013239 NA coding upstream 174904 25526642 ~ 25537475 (-)
G43011 NA non-coding downstream 149727 25136776 ~ 25139743 (-)
G42800 NA non-coding downstream 1066732 24220651 ~ 24222738 (-)
G42760 NA non-coding downstream 1372446 23912791 ~ 23917024 (-)
G42743 NA non-coding downstream 1387550 23901443 ~ 23901920 (-)
G42704 NA non-coding downstream 1510120 23778925 ~ 23779350 (-)
G43042 NA non-coding upstream 14528 25366266 ~ 25424074 (-)
G43044 NA non-coding upstream 15860 25367598 ~ 25369063 (-)
G43072 NA non-coding upstream 167073 25518811 ~ 25519993 (-)
G43100 NA non-coding upstream 236176 25587914 ~ 25588261 (-)
G43165 NA non-coding upstream 767959 26119697 ~ 26119919 (-)
AMCG00013223 tk1,kith,LOC102792372 other downstream 122697 25162157 ~ 25166773 (-)
G43001 NA other downstream 211226 25075393 ~ 25078244 (-)
AMCG00013216 NA other downstream 260466 25025738 ~ 25029004 (-)
AMCG00013204 mafg,LOC108241257,LOC106533856 other downstream 387042 24879641 ~ 24902428 (-)
G42749 NA other downstream 1441993 23844083 ~ 23847477 (-)
G43070 NA other upstream 164342 25516080 ~ 25516963 (-)
AMCG00013241 NA other upstream 236749 25588487 ~ 25628252 (-)
AMCG00013245 NA other upstream 424636 25776374 ~ 25777723 (-)
AMCG00013246 NA other upstream 434405 25786143 ~ 25791759 (-)
AMCG00013258 NA other upstream 1127873 26479611 ~ 26484414 (-)

Expression


Co-expression Network