G43062


Basic Information

Item Value
gene id G43062
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 25508191 ~ 25511347 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU53701
CGAgacttaaatacaaatatatttattacagaaaatcCAGAAGTACACCATGAAAtgtcaacaaaatataaagtaaagtaGAGGAAATATTAACAAACCAGCAGAAGCAGCTAGCCAATAggacacaaatacataattaaattacagaGCTGGGTGCATATTGGTCAACTGTGAGAGAAGAGCAGAGAAACAACCATAAAGTTCCTTTCGGATTCTCTCACACATGTAGCAATGGGACAGGATTATGCGACTGTTAAGGACATCACAGCAGAGAACACCGGAGATTCCACCAGCATGTTGAGAAAGGTATCCCAGCATGCAAAGAGGGAATAATGGACCATGAACAGAGACagagcagcagaaaaaaatactggaaGTTTGAAGCATCTGATAAGCTTTCATTCTAAATGGCAAGCActgcatattacatttaatattggTAATTAGACATGTGTGACATACAATGATCATAAGAAAAGTAACTGAATTactaaaaatactattaaaaatgggattcaaatatgaaattattattatattacaacCCTAgctgggaaagaaaaacaaaactcaaaatacatatatacacaaccaACACACAGCAGAGTGAAAAGCCCAGCCCAGGCACAGTGCACTGTTAGGACTCCTGACCTTCCAGCGATTGGTTTCATTCTTCATCCATTGCAGTTTTGATCAATTCGCCTCTCCTTGCTTTAGCAGCCTGCTCAAATTTCTCAATCATTTGATTGCATGTCTTTTAATCAGCAGCTTCTGTCGGTCCTTTTGTAGCTTCAGGAACTCTTCCACTGTGAGCTGCTCAACAGTCTTCTTCAGAGCAATAAAACCACAGGATGGGGAATGGGTTTTGTGTTCCTTCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU53701 True 878 lncRNA 0.38 2 25508191 25511347

Neighbor

gene id symbol gene type direction distance location
AMCG00013232 NA coding upstream 22571 25479858 ~ 25485620 (+)
AMCG00013234 socs3 coding upstream 84207 25421661 ~ 25423984 (+)
AMCG00013229 NA coding upstream 123719 25375516 ~ 25384472 (+)
AMCG00013231 NA coding upstream 141645 25357317 ~ 25366546 (+)
AMCG00013228 LOC108274176,LOC108426518,LOC103022618 coding upstream 156453 25331132 ~ 25351738 (+)
AMCG00013237 NA coding downstream 40248 25551595 ~ 25554794 (+)
AMCG00013243 slc38a10,LOC107749860 coding downstream 235318 25746665 ~ 25775438 (+)
AMCG00013244 LOC105892758 coding downstream 266565 25777912 ~ 25784972 (+)
AMCG00013252 ttyh2,LOC106589617,LOC106610147 coding downstream 748693 26260040 ~ 26312137 (+)
AMCG00013254 dnai2,LOC106610195 coding downstream 802939 26314286 ~ 26318743 (+)
G42950 NA non-coding upstream 132092 25089170 ~ 25376099 (+)
G42925 NA non-coding upstream 491825 24991455 ~ 25016366 (+)
G42922 NA non-coding upstream 581446 24924791 ~ 24926745 (+)
G42906 NA non-coding upstream 626133 24879764 ~ 24882058 (+)
G42857 NA non-coding upstream 739951 24768015 ~ 24768240 (+)
G43063 NA non-coding downstream 861 25512208 ~ 25512901 (+)
G43064 NA non-coding downstream 11131 25522478 ~ 25524992 (+)
G43078 NA non-coding downstream 77132 25588479 ~ 25592334 (+)
G43079 bahcc1,LOC107722173 non-coding downstream 83024 25594371 ~ 25594607 (+)
G43080 NA non-coding downstream 83350 25594697 ~ 25595941 (+)
G42858 NA other upstream 738043 24768424 ~ 24770148 (+)
G42846 NA other upstream 758796 24747492 ~ 24749395 (+)
AMCG00013198 NA other upstream 1176337 24241269 ~ 24331854 (+)
AMCG00013147 NA other upstream 3247375 22248497 ~ 22260816 (+)
G42453 NA other upstream 3262401 22242429 ~ 22245790 (+)
AMCG00013236 NA other downstream 2006 25513353 ~ 25521681 (+)
AMCG00013248 NA other downstream 282058 25793405 ~ 25798013 (+)
AMCG00013251 NA other downstream 641889 26153236 ~ 26161139 (+)
AMCG00013255 NA other downstream 743627 26254974 ~ 26258982 (+)
AMCG00013257 LOC106612075,LOC107560953 other downstream 856448 26367795 ~ 26396705 (+)

Expression


Co-expression Network