G43064


Basic Information

Item Value
gene id G43064
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 25522478 ~ 25524992 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU53705
GATTTAGCTCTGTGAATAAGTACATTGACATCTTCATAATCGCCAACCAACCTTAGGTTACATGTATGTTAAAAGCAACAGATTTAGAGTGGGGTGGAAATTCAAAATAAGAATGACCTGTTCTGGGTTAATACCAGGGTCTTTACAAAAACTGAAGCCAGTCACTCGTTATAGGATGCTCCTCATTTTGAAGTCGACCTGTGTTTCAGccagttgatttattttcagcaggGTGTTGGTATTGGTTACAGACCAGCTTAGGTGAAACAAGGTCTCTTATACTAATTAACAGTTAAATTGATGGCACTCTGGATACTTCTGCTGTTGCTGCAACGGATGTGTGTTTTGGTCCATCTCAATTGCTGCTGGGTGTTCTATGTTTTCTAAGTAGGGGATAGGTATTGCTAGGTTAATGTAAGGAGTCTGTTTGCCATGGGAGATGCTTCATGTCCAGCCACTGGGGATATCTAGGTAATTTGTGGCCCAGCATGATACCTCAGATCTTGCACAGTGTTGATGAGGCCGAGGCTGGAGTGCAAAGGGTGAATTTTATCCAGCCCTTAACAGAACAGTCTGAAGCGACAGACCAGAAATTATAGAGATGACAGCTGCTTGGACTGGCACAGAGAGAGCGAAATAACTCATTCCTGCCTGGACAGGTATGAGTGCAGAGCAAGAACAGTGAAAATAAGAGATGCCGAGGGAGCAATtcacagagctgtatattgacCCTTTACCAGAAATCAGTGATAGAAATAATAAGAATGAAATGAACGTTTTCTTGAAACTTTGAATCAAAGGGACTCTGCAGCTTCAGTAGCATCAAGGTAAAATATGCCATGTTATTTATAGTTGATCCAACAGTAGACTGAAATTGGTTTAATCCAGAAAATggcacacatttttgtgtttctcttgaCATCcagatgatatatatatattagaagcTGTCATATCTCTATGTGCAGATTTTGTGTATTTCCACATGGGTGGCTTCTCTGTTGTTGTGAAACCTGTCTAACAACCGCATTTGATGTGTCCCAGCCAAAGTGTAATCTGCACTTTACAAGCAGCTTTGTAGAATTCAGAAAAGGACTGTTGGTCCCCTCCTACGTGTATTGCTGTCTGCATGTCCCGACTTGCAGAGATAAGCCGGGTAGTGCAGAATGCAGTGTTGCAGGTTCCACATGGCAGGTCCACCCATCTTTGTGGGGCgactcctgcagcagctcctgaGAAAACTAGGCTGCCTTGTATCTCGGCCTGCTGGTCCAGCCAGGACCGTGCTGTGACATGTTCTAGGGCCCTTTCACGAGCCGTATCGACACGAACTAGTGCGTTCTAATGTAATCGGTGTCCTCTTAGTCTGCTCGTGTTTGTTTCAAGACAGCAGGCATTGCGGGTGGTCGCCCCTGCCATTTGCAAGAACATTTGCCTAGTGAAGATTCCCTTTCAGAGTTGTGCTTTAAACTGAtgtgggacagtgccctgtctaaaTGCTagatatattatttgtattactgctgCAGCAGGACTGTGTAAATGATGTGCATTTCAGCTGTCTGTATTGCTCTGGGTAGGCCAGGTTTACTTCAGTGTCTGTGCAGCTGGTTATAGGATAAACAGAACTCTCTTTTATGGTCATATAGAGGTCAAATGACCAAGAAGAATGTGATAAGGTTTGGGGCACCTCGCTGACATCATGGGGTTGCCTGGCAACCAAAGAAATCTCCTGTATGATagtatatactttaaaaaaaactccagATGAGCCTTCCCGACTGGCCGCCTCCAGAGCTAAATAAACTATGTTTGGTATTATTCTACTTGAATCGGGCCCTGAGTGTTCCTTGTCAGCCTATCTATTGAGAGACAAATATTCTTCCCGTCAAAACTATGAATgtctttttacatttccttgAAGATGTTTGTTTATGCGACGAATCTGTGAACATTACACTCTCAATTGCTCACTTGATATACCTGAGATTATAACTACCTCAGAAGGGGGGCTGAAATGGTGACAGGCTTCTAACACATCTGACTCCTCTGTTTTCATGTTTCCTtgtgactttaaaataaatctcaatgTGTTCCAAGTCAAGgcctgttttagttttttcttacaGTCTCTATTTGAAATCTGACAGGCATTACTATTTCCCCCCTGTACTTTTTCTCAAAGGACAATAACACGCCTGTAGTGTTTTTTTCCAGCCAGTGGTTATTCCAAGCTCGTCTCGTAATCATCTTGACACATTAATGGGCATTCCTCTGCTTTAGGGGAAATGGGAAAACCAGGCTGAGGTAAATTATAGTCCAGAATTAAAAAGCGAGAGCCCCTCCCTGCCTCCTAATCTGTGACCTTCTATTCATGTGCTCACCGATCCCTCCCTCACCCTCTGGAAGAGATTAGTATGCCAAGACTGTATGGTAAATCTGCAATTTACACAGCTCACTGTAGGCTTAAGATGTACCTTTACTGATATTTTTGAAGGCTATTCCCTTATTCTTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU53705 True 2515 lncRNA 0.43 1 25522478 25524992

Neighbor

gene id symbol gene type direction distance location
AMCG00013232 NA coding upstream 36858 25479858 ~ 25485620 (+)
AMCG00013234 socs3 coding upstream 98494 25421661 ~ 25423984 (+)
AMCG00013229 NA coding upstream 138006 25375516 ~ 25384472 (+)
AMCG00013231 NA coding upstream 155932 25357317 ~ 25366546 (+)
AMCG00013228 LOC108274176,LOC108426518,LOC103022618 coding upstream 170740 25331132 ~ 25351738 (+)
AMCG00013237 NA coding downstream 26603 25551595 ~ 25554794 (+)
AMCG00013243 slc38a10,LOC107749860 coding downstream 221673 25746665 ~ 25775438 (+)
AMCG00013244 LOC105892758 coding downstream 252920 25777912 ~ 25784972 (+)
AMCG00013252 ttyh2,LOC106589617,LOC106610147 coding downstream 735048 26260040 ~ 26312137 (+)
AMCG00013254 dnai2,LOC106610195 coding downstream 789294 26314286 ~ 26318743 (+)
G43063 NA non-coding upstream 9577 25512208 ~ 25512901 (+)
G43062 NA non-coding upstream 11131 25508191 ~ 25511347 (+)
G42950 NA non-coding upstream 146379 25089170 ~ 25376099 (+)
G42925 NA non-coding upstream 506112 24991455 ~ 25016366 (+)
G42922 NA non-coding upstream 595733 24924791 ~ 24926745 (+)
G43078 NA non-coding downstream 63487 25588479 ~ 25592334 (+)
G43079 bahcc1,LOC107722173 non-coding downstream 69379 25594371 ~ 25594607 (+)
G43080 NA non-coding downstream 69705 25594697 ~ 25595941 (+)
G43081 NA non-coding downstream 75821 25600813 ~ 25601177 (+)
G43082 NA non-coding downstream 79006 25603998 ~ 25604238 (+)
AMCG00013236 NA other upstream 797 25513353 ~ 25521681 (+)
G42858 NA other upstream 752330 24768424 ~ 24770148 (+)
G42846 NA other upstream 773083 24747492 ~ 24749395 (+)
AMCG00013198 NA other upstream 1190624 24241269 ~ 24331854 (+)
AMCG00013147 NA other upstream 3261662 22248497 ~ 22260816 (+)
AMCG00013248 NA other downstream 268413 25793405 ~ 25798013 (+)
AMCG00013251 NA other downstream 628244 26153236 ~ 26161139 (+)
AMCG00013255 NA other downstream 729982 26254974 ~ 26258982 (+)
AMCG00013257 LOC106612075,LOC107560953 other downstream 842803 26367795 ~ 26396705 (+)
AMCG00013265 LOC107672452,LOC107711237,LOC107567237,LOC107670476 other downstream 902954 26427946 ~ 26478544 (+)

Expression


Co-expression Network