G43072


Basic Information

Item Value
gene id G43072
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 25518811 ~ 25519993 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU53713
cctaGAGAAAACCCATACCACTGTGCCGCCCATAATGATAATGTCAATACTTGGAATGTTTGTGATTAGTAAACAATGCTTTTAGACttggaacagagagagagatagagcgaTAAAAGACAGGAGGAACAACAGAAGTGTCTAAATTTAGATGAAGccaaactgaattgaaaaaagTACAGGCTGATGGccttaaaacacaaacaagcccAGCAGCATTATAATATTTCCACCTCAGCCATGCCTCACACTCAGGTAGACAACCTGACTGCGGCACCTGTTACACTCGCTTggactctcacacacaacacaatccaACACATGCTGATTATTTGACTAGCACACAACAGAGCAGCTCTGCAGTAGAAAATGACTTGGTGAACTGCCTGCAGCCTTCTATTTCAATTGTCCTCTCCGATATTTTAGTTTCCTACATGGTCTGTGTGGAATAAGGCACAATGCACCGCACGGGTTTGGATGATGTCATCTTCATATCattgaatgatttattattactgcatttGTTCTAGTCCCATGGTTAAGGAAAAAATCTGGATGTGTGCAGGAGGTGAAAGAGATGGCATGTGTCCTTGATTACAAGTTTAATAAGAAGCTTAAGGCTGATTAAACTGCAATGCTTTGGCAAGGTCCAAACCGCATGACTGCGGAGTAAGTGTCCCGCATAGGTTGTACTGCACTTGTGTTTTGCACGTCGGACTTTGGACAATCTGACAGATTCACCCATTAACCCTCGTACTAAAGGATCCCTCTTGGGGACTGACATGTAGGGGCTGCTTTGAATGCGGTCAGTCTTCTTAGCGTTTTTTAACAGATGTCAGTGCGGGTGGTTCTTTCCCCTAAAAGGATTGGTTGTTTCATGCAATCCTATGTGACATACCTGCCTTCGCACCACACACCTCTACAGCTTTACAGGTGGTTGCAGTGATAATCCGGTGTGGAGAGAGACATGCAATAATCCAGGGCAGTCCACTCCCTGGCTACATGGGGCATGGCGGCTGCCTTCAGCACCCCAGAGCAGGCCCTCAGAGGATCAGTAGGGGGCAGTTCCTCAGCTGCTGGTAGGCGGAGAGCAATCTCTCCATTGTCCCACTCGACATCCCCAAACCCAGGGCATTGTGTCCGCGAGCCTCCTGAACTGCCTCAGACAGAGCCTGGATCACAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU53713 True 1183 lncRNA 0.47 1 25518811 25519993

Neighbor

gene id symbol gene type direction distance location
AMCG00013238 NA coding downstream 5940 25508197 ~ 25512871 (-)
AMCG00013240 NA coding downstream 14295 25493377 ~ 25504516 (-)
AMCG00013233 NA coding downstream 100233 25385739 ~ 25418578 (-)
AMCG00013235 NA coding downstream 160310 25357680 ~ 25358501 (-)
AMCG00013224 NA coding downstream 407376 25099351 ~ 25111435 (-)
AMCG00013239 NA coding upstream 6649 25526642 ~ 25537475 (-)
AMCG00013242 NA coding upstream 165476 25685469 ~ 25685725 (-)
AMCG00013247 NA coding upstream 277227 25797220 ~ 25803654 (-)
AMCG00013249 NA coding upstream 291725 25811718 ~ 25812734 (-)
AMCG00013250 sdk2,sdk2b coding upstream 319475 25839468 ~ 25910122 (-)
G43042 NA non-coding downstream 94737 25366266 ~ 25424074 (-)
G42993 NA non-coding downstream 142488 25045378 ~ 25376323 (-)
G43044 NA non-coding downstream 149748 25367598 ~ 25369063 (-)
G43040 NA non-coding downstream 167073 25289470 ~ 25351738 (-)
G43011 NA non-coding downstream 379068 25136776 ~ 25139743 (-)
G43100 NA non-coding upstream 67921 25587914 ~ 25588261 (-)
G43165 NA non-coding upstream 599704 26119697 ~ 26119919 (-)
G43171 NA non-coding upstream 628423 26148416 ~ 26148633 (-)
G43184 NA non-coding upstream 735003 26254996 ~ 26257823 (-)
G43194 NA non-coding upstream 789360 26309353 ~ 26312144 (-)
G43070 NA other downstream 1848 25516080 ~ 25516963 (-)
AMCG00013223 tk1,kith,LOC102792372 other downstream 352038 25162157 ~ 25166773 (-)
G43001 NA other downstream 440567 25075393 ~ 25078244 (-)
AMCG00013216 NA other downstream 489807 25025738 ~ 25029004 (-)
AMCG00013204 mafg,LOC108241257,LOC106533856 other downstream 616383 24879641 ~ 24902428 (-)
AMCG00013241 NA other upstream 68494 25588487 ~ 25628252 (-)
AMCG00013245 NA other upstream 256381 25776374 ~ 25777723 (-)
AMCG00013246 NA other upstream 266150 25786143 ~ 25791759 (-)
AMCG00013258 NA other upstream 959618 26479611 ~ 26484414 (-)
AMCG00013264 NA other upstream 1033556 26553549 ~ 26557324 (-)

Expression


Co-expression Network