G43078


Basic Information

Item Value
gene id G43078
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 25588479 ~ 25592334 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU53719
tattttaatatttacttaaCAACTCTGAGAAATATCGCATATTAGGTACACATTTTTAGACCTTACCTCTTTTATTATCGTAAATGATAGTGGATTTAAATAGAGGGCAAAAGGATAGACGGTCCTGCGTCCTCCCTGCCCCTTCCTGCGGCCAAtcagccattttaaaatgctgtctaACTGCTGAACATTAATGCAATTCTATACACCATAGTAGTATTGCACCTGCGCCTAGGAGAGGCCTGTCTCTTAATGACATCACTTCCCCTTCCTTGTGTGTGCGCACATCACACCCACGCACGCTTTTGCTCGTGCTTGCTGACCTTGACATTttcaaagtcttttttttcctgttctgaACCAGAAACATTTTGACCTTCATATGAACAGGATTCATGAACGAGTCGGTCACAACTGAGATGCGAATACACTTCGGGAATCAAGTGCATTCGAGAAACTCCATCAACTATAAGGCTTCCGAGGTGCCACGTGGCTCCAGGATCTCAAACGAGCTCGGAGAAGATCAGTTCATAcacgtttgtttttttacacccATGTCTTGGTACATTCACATCCTTTTGACCAGTGCCTTGCCTTTAAGAGAAATCAGACTTCAagtcccacaatgcactgtgagaagtaaaaaattaaataatacgcAGACATTCACACGCACATCAAACTGACATTGATGTTTGCACATTGTCAAGCTGTTCTTCAGATCCTACAGCCATGTGGAAGCTCTTTCAGGTTCCTGGATTTACAGTGTTTCTTGTATGGTACAGAAATATACAGCAAGCggtaacattatatacagtatagacaGAAAGTCAAGCCTACATGGAACAATCTAGTAAACCTATCACCGAACAAAGAGCCGTATAATTCAGTAGATAGTACGGATGTTGCCGAGTTACTATCAGTGATTTAACATAGCTAAGACTCAGGCGATGGTGACACTTTTAAGGTTTGATAATGCTTTGACGCCTAGTATCACTAGAAATCCTCACCAGAAACTtggttatattattaattaatattaaatactaaATTGTATGACCCAATATCTCTATAACCACCTTAATATTTCCCCTTAAGTAGCTATTCTGTAGTGGTCTTCTACACAAGTATTTAGattctttagttttctttgtATCTGGAGATGAAAAGCGATCAGAatttatataatgaattaaGTCTTTGCGTTATAAACTTCAAGTTCGAAACATCattagaagtttttttttttttaagaaacactttCTAGAAGCACAAGTCAAATAGATCCCAGTAACCATGAGAAGCAATCCCATATTTAGTACacaatgaacattttaaaaaacagacagtatataaaaactatgagacttaaaaaaaaaatatatatatatattcaaaacaacTAAAATCAAACTGCTTAGATGCTTACAGCGTAGCAATTTgtcttttaatgaaatgcaacccaaggcaataaaataaagataaaaaacttttcaattaaaaagattCCATACTTATTATTTCAAcaagcattaaaacaatatcataACACAACTCCCTGGGTCACAGCACCTCGGGGTCGTGATCTGGTGGTGTAATGATGTCACTTCCTGACATTTGCCAATCGATCTGTTTGTTAGAGGAAAGGAAGGCAGGTCTTCCTGTACTGTATCAATGACCCGGAAGAGGTGTAAAGAATTGTTGTGTTACATTACTGCCATCTTTCTGATGATGTCCAGAGAACAGttgtaatcatatatatataagaaaagagctgtgttttaatgttttgtttattaatgctAAGGACTTGAGACGCAAGAAGTCTGAGCAACACAATACTTGACTAGAGCAGCAGGGATTTGATCACTGTGCACGGATAATGCTTCAAGAAACCACACAAGTGGCCATGTGGGGTGCCTTAATTAATCAACAATCAGGGAATTGGTATTTTATGTTTGGATCTCATTGCACAGGATAGGGAAGAAAGTGACACCATGTACATTGCCCCAGTGTCCTTGAAAGCTATTGGTTTTGCAGTGTAACAAGAGCAttaacaaagcaaagaaaaaacaatgaagaaaatctatcagaaaagaaacatttaccTTTAGCAAGATGGCGAAATGTACAATTCATACAGGCTTGCATATTGAACAGCAACAATAACACggacaaaaatgtatttggcaaaagcaaaaacatgacATGCAACATTTTGATTGAGCTTCTCAAACTGCCTTCTTGTGTTCGTCTGATTGTCCTTCACAGGTAACTTGAGCCAGGCTGTGCAGGGCCTGCAAGTGCTtgaggtgtgtgtctgtgtgcacgTGGACCTGTGACACAgctatacacactcacacagacaacaacacGGTCGTTTCACTTATTCCAAACTACACTGGCCAATTCGATTGCAGGGTCCCGGACAAAGGTTTCTGATTTGATTTTcatatattcagaaaacaaaacaaaatttccAAAGGaaatatcattaaaacacaaaacctttAAAGGTGCTTTGGTTTTTGAAgccagatatatttatatacatcaaTTCACTATCAGGGTCAGATAAACAAGAAATTACAGCCTAACAAAGCATGTGGAACTGCAGCAGCCACACTCCCCTCATTTTAAAAGGATCAATAAGTCATAAGAAACTAAGTTTCGTTTAGTATTTTATCAATAAGCAATAAACAGCGCAAGGGGCTGAATCAGGAGAATAGTCccttaaaacatttgtttgaaagAAGTAGTTTAACACTTCACATAAAAAGAAAGCCATACAAATCTGTAATTGACGGACTCAGCGGCAATATGCCAAACTAGCAGAAGGTAGATACTGCTGGAGGGTTTAGGTGCGGAAGTAACGAATACAGTTTTctattccttttctttcctttgatattttttttatttcctttttagaaTAAAGCCTCTACAAAACTAATCGCAAATCTTAAAAGTCAGGATTGCACATGGTTAAAGAACCATTCTGAAAAAAGAAGAATTGACACAGACATATATTAGTGTTCgatctgaagatacaaaatatatagaacGATAGCTCCTGACTGCTGAGGGGGTAATCTTAAAaccagatttggagaggttagTTCCTTATCTTCCATCTCTGTGTCCCTCCGGTGACCTACCGTTCCCGTGTCATGTGACATGAGCACACTCTCCACAGCTGTGCGCCTGGGTGGAAACATGTCCACAGTGCACCACCGCCCAGCCCAGTGCAGTACAGCCCCCTGGGCGTGGACAGTGGGTGCGCAGGCCACAATGAGAAGGGCAGGCCCGAGGGGTGCCCACTGAGTCAGGAGAGGAACATCTTGAAATGTACCTCACCTTTTCGCAAGCACTTACTGAGAAAGACTAActcaaatagaaaataacatcAGTGATCGAGCTCTTCCTATTTCTGGGTCAGAGCCATGGCCTGTTTTTAGATTGATTTTGGATGTTTATGTTCCCAGTGGCATGTTGTACACCTCCCGAAACAGCACGGCCATTTCAAAACcaagagaataagaaaataagaaagttttgttttctttgcttttcatgatttttttaagTGAGGCGGTTTAAAAGAGACAGGCCAAATGACCTACTTTTTTCTTGATAGGGGAACTCCTCTCCATTAAATAAACCTTCTCTTCTGTCCCCGAATCTGTGTACAGCAACTCCCTTGTCTCAGCAGGACTTGTACAGTGCAGGGTTCATACTGTAGTTTTGTgggtttttttgtgttttatttttgtttttatttttattttttaagaaaggcGAAATAAAAAGTCATAAATCTTtcgaaaaaagaaagaaaaaacaactttgtgAGAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU53719 True 3856 lncRNA 0.38 1 25588479 25592334

Neighbor

gene id symbol gene type direction distance location
AMCG00013237 NA coding upstream 33685 25551595 ~ 25554794 (+)
AMCG00013232 NA coding upstream 102859 25479858 ~ 25485620 (+)
AMCG00013234 socs3 coding upstream 164495 25421661 ~ 25423984 (+)
AMCG00013229 NA coding upstream 204007 25375516 ~ 25384472 (+)
AMCG00013231 NA coding upstream 221933 25357317 ~ 25366546 (+)
AMCG00013243 slc38a10,LOC107749860 coding downstream 154331 25746665 ~ 25775438 (+)
AMCG00013244 LOC105892758 coding downstream 185578 25777912 ~ 25784972 (+)
AMCG00013252 ttyh2,LOC106589617,LOC106610147 coding downstream 667706 26260040 ~ 26312137 (+)
AMCG00013254 dnai2,LOC106610195 coding downstream 721952 26314286 ~ 26318743 (+)
AMCG00013253 kif19,LOC107560952 coding downstream 729432 26321766 ~ 26363091 (+)
G43064 NA non-coding upstream 63487 25522478 ~ 25524992 (+)
G43063 NA non-coding upstream 75578 25512208 ~ 25512901 (+)
G43062 NA non-coding upstream 77132 25508191 ~ 25511347 (+)
G42950 NA non-coding upstream 212380 25089170 ~ 25376099 (+)
G42925 NA non-coding upstream 572113 24991455 ~ 25016366 (+)
G43079 bahcc1,LOC107722173 non-coding downstream 2037 25594371 ~ 25594607 (+)
G43080 NA non-coding downstream 2363 25594697 ~ 25595941 (+)
G43081 NA non-coding downstream 8479 25600813 ~ 25601177 (+)
G43082 NA non-coding downstream 11664 25603998 ~ 25604238 (+)
G43084 NA non-coding downstream 27276 25619610 ~ 25620005 (+)
AMCG00013236 NA other upstream 66798 25513353 ~ 25521681 (+)
G42858 NA other upstream 818331 24768424 ~ 24770148 (+)
G42846 NA other upstream 839084 24747492 ~ 24749395 (+)
AMCG00013198 NA other upstream 1256625 24241269 ~ 24331854 (+)
AMCG00013147 NA other upstream 3327663 22248497 ~ 22260816 (+)
AMCG00013248 NA other downstream 201071 25793405 ~ 25798013 (+)
AMCG00013251 NA other downstream 560902 26153236 ~ 26161139 (+)
AMCG00013255 NA other downstream 662640 26254974 ~ 26258982 (+)
AMCG00013257 LOC106612075,LOC107560953 other downstream 775461 26367795 ~ 26396705 (+)
AMCG00013265 LOC107672452,LOC107711237,LOC107567237,LOC107670476 other downstream 835612 26427946 ~ 26478544 (+)

Expression


Co-expression Network