G43194


Basic Information

Item Value
gene id G43194
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 26309353 ~ 26312144 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU53862
AACctagaattatatttttttattatcattattcccCTCCTGAGGGggtataatacataaaaaccaAGCACCAGTCCCAATAGCTGAAGATGGTGCAACAATGGAACAACCTTACATGcatcaaaaaacaaaccgacaaatggaaaaaacaaacaaacccaaaaaaattataataacaaaaaaaaatctacagctCTAAGGATCAAAAATATCTACTGAATTGAACATTATCAGACATGGAAAAAGCAAACAGGTTTTCGACCTGAGGGGGACAGTTTTCTCTCATGGAAGACGTATTAGCAGTGTTAGTATCCTATTCATTTTTTCTGACCCAATGTACTGCATTTTTCATACTGCCTTTTCAGTAATAGTGCATTATTGTTAtgttgtaacattttaaaaacaattcctgCAGTGGAAGGGGTTTGATATTGGTACAGTAATAAAAGCCCATAAAACTGGTTCATGCTTCACTTTACACTTCTGAATATATGAAACAGTAGGAGCCCACAATGCTGGAATGACTTTGTGcattcataaaaagaaaaaaggaatgaaatTAAAATCGTCCTTTGCGGTGGAGAAAACATCAGCCTGTCCCAGGATCGAATAACCAAAAAACAAGAGTCATTGACATCCAGGCTCCAGCCTTCACTCATTTAGTATGTAGAAGTCTAACCACTTGTGGCACATGAACATACAAATCGCtgttattataatacaatttatatacaaaaaaaaaaaaagttggtctGACACACACTTGAACACTTCAGCTTcaaatcaatgtaaaaaaaactgcacttcGGAGAATTACAATTCTATCATCCACAAACGGGGAAAACAACTATGCAAGAtggatgttgtttttaatttttttaattgaaaaactaaTTGTAACAAACTCAAGGCCAGGGGTCAGGCAGGAAGAGTTTGGGTTCGTGGTTCAAGCTTGAGGAGCCCATTCCTCTAGTTTTAATGTTATAAAGATTGAAGaatatatagatctatatatttttaaaaaagcatttatttcctttGCTGTGCTTCTGCAGTAACCCTTCCAAATTAAGTGCCTTTAGCACAGACCAGAAAAGTAGGTTAGTGCATCTGAGAGGGGGTGAAATTGAGGATATGGATGTTGGTAGTTGGGGCACAAGCAAAAACTGAATCTGGAAGACATGACAAGGAGAGGGTGGTTCTCCATCCCAGTCATGAAATAACTGGTTGGCTCAGCATTTGAATTGTGCTTCAAAAGTATCAAAAGTCTGATAGAGAAAGTGTACTGAAGTATGGTGGTGTTGGGGTTTCAGTTCTTGTGGGGGCCAGTTTGTAGGAAAGAACGGTTGAAGCCCCAGTTGGTACTGTATGTGACTCATGTTTCAGTGTACAGCAGATGGgcagagaaaatacaaacagcAATACAAGATAAGGCATAAGGTTTTCCAGTTGGGAAAAACTGTTAAAGCTTGGACACTCAATTTcaagagtgttttgttttttttctttaacttttccCTTACCTGATCTTGTATTCAAAGTAAAGTTAACAAAATAGAGTGGAACTAAAATAAACTGGTGAGAAATGTGTATCCCTTATGCTGCATGCTTTGGAAACTTTGCCACCAAGTCGTTTCCTTCCCTGTTGGAAATTCCTTGGCcaagaattaaaatgaataaaacaaacaaacaaacaaacaaaacaaacattaaatcgTGATGAAGAGACAAAtgttataaaattattataaaacagtCTCGTAGCTAGTCAgttaaatggaaagaaaaaaaggggaGGGGGTTAAGAGACAGTAAAAGCACGCTCCCATTCctcacatatttaaatgttgaacTTTAAGATGCCTCACTTTAAATACACTCCTATAGATCAGAATCTATTCCTTGGTTAGGAGATGCATCAATGTGTTTTTGCAATCACTCTCACGCTCCCAAAAGGTTTGATGACCGAAGCACAGTTGcctgaactgaaaaaaaagtgtgttcaTCTTAGCATCTTGTCTTAGtatgaaagagaaagaggctGGCAAATTTGAAAACTAAGAAACACAATCCAGAAAGTGGACTGGCGATGGAAGAGGTTTGTAGCTTCCTTATGGAAAAGCTATGGCATAAAACCACTTAAATACcatagtaaaaaaaacaattttatttcagCTTGACGTCACCCTGTCTGAGCTCTACCTCCTgtctaaaagaaaaacaggcaaGGTACCGAGCTGGAGCAAAGCATGCTTTGAGGTAAATCAGTTGGTTTCCAATGTGAACCTAAAAATGTCTCATTCTTGATTAACCACCTCATATTTTCATGAACTCACATGCCTCTATCACACAGCTAATCAACCTTGTAACTGGagaggggagaagaaaaaaaagggaaccATTCCAGTTTGAGTGACTGAAAAATTAGGAGAACTGCATTTGTTTCTGGAGTTTGAGAACAGCTGTTGGGGATATCGAGGTGCTGGCCACGGTGAAGGCAACTGGGCTGGTGTCTGGgagctttttcttttaaatatgcaattaaaacattgtgactCCCTCCCCAGGTAAGCCATTTCCAGCAGGCCGGGCGAGAGCGGTCACTCAGTGCAGGGTCCATTTCAGCAGGGCCACACATTGGGAGGCTGTGCTTTCCTCAGAAACGGGGGGTGTGGGTTGGGAGGTAGGCGGTGGGTGGGTGTAGAGGGGGTCTAAACTTGGAAATCATTCCCAAAATGCCTCCTCTGGTCAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU53862 True 2752 lncRNA 0.39 2 26309353 26312144

Neighbor

gene id symbol gene type direction distance location
AMCG00013250 sdk2,sdk2b coding downstream 399231 25839468 ~ 25910122 (-)
AMCG00013249 NA coding downstream 496619 25811718 ~ 25812734 (-)
AMCG00013247 NA coding downstream 505699 25797220 ~ 25803654 (-)
AMCG00013242 NA coding downstream 623628 25685469 ~ 25685725 (-)
AMCG00013239 NA coding downstream 771878 25526642 ~ 25537475 (-)
AMCG00013259 NA coding upstream 173289 26485433 ~ 26492758 (-)
AMCG00013263 NA coding upstream 183792 26495936 ~ 26500765 (-)
AMCG00013262 ush1g,LOC107556601,LOC107698769,LOC107664446,LOC107568596 coding upstream 189052 26501196 ~ 26512078 (-)
AMCG00013261 NA coding upstream 237877 26550021 ~ 26551291 (-)
AMCG00013260 hid1,LOC104925062,LOC104944224,LOC108241245,LOC107710705 coding upstream 255126 26567270 ~ 26588100 (-)
G43184 NA non-coding downstream 51530 26254996 ~ 26257823 (-)
G43171 NA non-coding downstream 160720 26148416 ~ 26148633 (-)
G43165 NA non-coding downstream 189434 26119697 ~ 26119919 (-)
G43100 NA non-coding downstream 721092 25587914 ~ 25588261 (-)
G43072 NA non-coding downstream 789360 25518811 ~ 25519993 (-)
G43204 NA non-coding upstream 54835 26366979 ~ 26367220 (-)
G43400 NA non-coding upstream 682228 26994372 ~ 26995304 (-)
G43410 NA non-coding upstream 734217 27046361 ~ 27046563 (-)
G43412 NA non-coding upstream 737424 27049568 ~ 27049842 (-)
G43417 NA non-coding upstream 743408 27055552 ~ 27059242 (-)
AMCG00013246 NA other downstream 517594 25786143 ~ 25791759 (-)
AMCG00013245 NA other downstream 531630 25776374 ~ 25777723 (-)
AMCG00013241 NA other downstream 681101 25588487 ~ 25628252 (-)
G43070 NA other downstream 792390 25516080 ~ 25516963 (-)
AMCG00013223 tk1,kith,LOC102792372 other downstream 1142580 25162157 ~ 25166773 (-)
AMCG00013258 NA other upstream 167467 26479611 ~ 26484414 (-)
AMCG00013264 NA other upstream 241405 26553549 ~ 26557324 (-)
AMCG00013295 NA other upstream 961085 27273229 ~ 27293073 (-)
G43473 NA other upstream 1256620 27568764 ~ 27569151 (-)
G43594 NA other upstream 1756069 28068213 ~ 28072787 (-)

Expression


Co-expression Network