G43402


Basic Information

Item Value
gene id G43402
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 27010372 ~ 27010651 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU54122
acactatgggaggaatagaactagatgaagtaacgcatgagaaagacctaggagtctatgtggactcctcactttctccatccaaacaatgtggggaagcaataaaaaaggcaaacacaatgttagggtatattgtcaaaagtgtagaattgagaacaagggcagtgatgttcagactgtacaatgcactagttagagctcatctggatactgtgtgcagttctgggctccacacttcaagaaagatatcgctgctctagaggcagttcagaggagagca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU54122 True 280 lncRNA 0.43 1 27010372 27010651

Neighbor

gene id symbol gene type direction distance location
AMCG00013291 NA coding upstream 11692 26981675 ~ 26998680 (+)
AMCG00013289 cep131 coding upstream 29003 26963688 ~ 26981369 (+)
AMCG00013284 NA coding upstream 47184 26929259 ~ 26963188 (+)
AMCG00013282 NA coding upstream 81792 26924566 ~ 26928580 (+)
AMCG00013285 nploc4 coding upstream 90315 26908791 ~ 26920057 (+)
AMCG00013283 LOC108429730 coding downstream 25964 27036615 ~ 27058921 (+)
AMCG00013287 tekt3,LOC107753251 coding downstream 101199 27111850 ~ 27117437 (+)
AMCG00013288 NA coding downstream 119513 27130164 ~ 27140599 (+)
AMCG00013296 NA coding downstream 538154 27548805 ~ 27569295 (+)
AMCG00013299 ndel1,LOC108432229,LOC104940291,LOC107672491 coding downstream 582124 27592775 ~ 27609468 (+)
G43326 NA non-coding upstream 80119 26872821 ~ 26930253 (+)
G43303 NA non-coding upstream 224811 26784953 ~ 26785561 (+)
G43138 NA non-coding upstream 1165778 25807419 ~ 25844594 (+)
G43085 NA non-coding upstream 1389133 25620937 ~ 25621239 (+)
G43084 NA non-coding upstream 1390367 25619610 ~ 25620005 (+)
G43438 NA non-coding downstream 259377 27270028 ~ 27417787 (+)
G43673 NA non-coding downstream 1379038 28389689 ~ 28389960 (+)
G43712 NA non-coding downstream 1727472 28738123 ~ 28738753 (+)
G43810 NA non-coding downstream 2139327 29149978 ~ 29151334 (+)
G43799 NA non-coding downstream 2146048 29156699 ~ 29158493 (+)
AMCG00013281 NA other upstream 87233 26892596 ~ 26923139 (+)
AMCG00013286 pde6g,LOC102221623,LOC103367935,LOC102781464 other upstream 105409 26897509 ~ 26904963 (+)
G43309 NA other upstream 198757 26808164 ~ 26811615 (+)
G43263 NA other upstream 470323 26524826 ~ 26540049 (+)
AMCG00013265 LOC107672452,LOC107711237,LOC107567237,LOC107670476 other upstream 531828 26427946 ~ 26478544 (+)
G43434 NA other downstream 147651 27158302 ~ 27158721 (+)
AMCG00013298 NA other downstream 375014 27385665 ~ 27415286 (+)
G43476 NA other downstream 578488 27589139 ~ 27590818 (+)
AMCG00013310 NA other downstream 918057 27928708 ~ 27935938 (+)
AMCG00013317 NA other downstream 996863 28007514 ~ 28072799 (+)

Expression


Co-expression Network