G43417


Basic Information

Item Value
gene id G43417
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 27055552 ~ 27059242 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU54137
GTTGAAATGAACAAACAGTATTGAAAAGCAACAAAGGCTGATTTTTTTCATGGACCTGATCTATAAGTTAAGTTGCCAGAATGGAGGTGGGCACGTCCTTTAGAAGAAGCAGGGATGAAATGTCAAGATATATGATGAGGGTCTCACCACCCGTACCAGACATAAACAGTTTCTGTGCCCGTTAGTGGGTGATGAAATATGATCAGCTCAGCCAGCGAGAGGACAGACACCTTGTTGTTTAAGTATCATTGTGCGTTCCAGGGGATTAGTCAATTTCGTCCTCACAGGAATTTATTAAtgtactgatttatttactttccaggtgggggggggcagtgtttTAAATAGTCTTTCATTTCAAGGCATTTCAAAGTGCTggacaatatattaaaaacaggaaaggaGTGATACAGCTAACCAGGAGAAATAGCACATGAGAAAAGATATGCATGTCTCTGGTGCATTAGGGTCAAGTAAATGTGGGTGCAAGAGAAGAGAACAAGAGAAGGCCTGGGTACAGAGTCTGAGAATACACAGATTTTGGCGCACACAGAGGACCCCTGTCCAAGGGGCGTGGGTTACAGGCAGGTTTGTTGTGATTTAATTTGTGGTTTTATATGAAGAATGAATGTCcgtttttcagtttaaataaattaaatctacaaAGAAGGCTATGACCAAAGCTCTTTGTAACAGACATCCATCCTTGGTATGatgatgcaaaacaaaacaagcaggTTGTGATTAAAGCTAGCGTAAATCAGCCACCCTTCCTCCCTTGCCCTGTGTAATATGCAGGCTTTAATTAACATCACCACAACAAAATGCAATGGCAGTTCAGTGCATATGTATACGTCATTCCCATATTTCTTACTGCCTCTCTGTGTTTATATGGCATGCACAGTCGACATGCTAAGCACACGTTTTACAGAAAACAGCCCAGCACCTGGACTATTATAGCTACAACTCAGCCCACTCACATTCACTTCTTTGGATGCTTATATGAATCAGTGTGAGACATTCACTTCTCTACGCCCACTATGctggtttaaaaaaagtattttcttgtcTCCTAAAGGGGGCTGAGGCCATTCAGAAATTCTCCATAATACATCTTAGGGAATTACCTGAATATGGGAACAAATTCCGCTTTGCTTTCTAGGGAGGagtaatgcaaaacaaacaaaaagtagaAGACGTAGATATCTGAAATGTTGGAAAAGTAAAAAGTTCACAGTGTGTAGTGCAAAGTTTTTTGTGTCGTTTTTAAACTCACAAAACATCTCTGTACCACAGCAGTGAAAGCGAGTTTCAGATTCAGAAAATGCACCTTTCTCAGACAGACAAGACAGATATcgaacaaattacatttcagccGTCGAGCACGTTTCTCAATTTagcagtctttgtttttaatcagtgcCTAAACCAAGGAATacatataacaataaaataaataaatctttgaataaataaatacataaatacatacatatttactaCTGTTTTAGGCCATGGGGAATCATAATATTCAAACCCTATCTATCTCTATGCAGTATTACTTTAATCTGAAAATTTCAGCAGTGTTACTTTGCACAAACAAGGGTTGTTATCCACAACCTTTGCTGCTATGGCATCACTTTGTAAGGACACAGTTTTGATGTGGCATTGCGTGATGTCATATGGAGGTAATAAATTCAAACTCCTATTGTGTGACACTACTAGGTACCAGTCTGACATTAAATCAGTATGTTTTCATAACTGGTGGCAGAGGAAAACTAAACTAAGTCTGTTTAATACtgttacacaataaaaaaatcccatAAGCCAGTGTGCCATTTAAATTTGTTACATCTCTTTGGCAACAATGAACTTATAATATTGGATATTTGTTTCCATAAATatcattttcaaatcattttcttatcttttttctttttctttttttacaaaaatagtATAGACTGCAGTTAAACGTCTTCTATCCTAAACTATTACATCATATGAAGTCcataaaaggcaaacagaaatacatattgttgttttgtgggTAGAATAAATACTAGAACAGCAACCTCGGCACAGTTACCGCGTTACTTGAGTGTAACTAGGGGAGTGGAGGCTGTGTGGCATTTCTCTCTGTGgaattaaaagtttacattttaaccTTCTGAGTGGAGAGAGTTTACatcaatttaaagtaaaaatacattaacttgGGACAAAGGTGGAAGGCCATATGTATCAGAGGGATCATCTCTGattctgaataaaataatctgtactGTGTCTGTTTGGGGATcctaaaaaagtaaacaaacgtgAATAATAATGTTGAGATTCCAGCTCGTCTGTGACACACATGTGGAGTgtattggttttaaaacaatatgccAGAACAGCGTATCTAAAACACTGATTCTGACATGAACTCATTTGATTCCCTCATGTAGAAACTAACACTCAAATTGTGATAAAAAGCGATACTTGATACAGTGAGGGCACTagatgtttcttgtttgtttgtttgtttctgcctTTAAGCAAATGACATGACAGAAAGCTATCCTATTGAAAAACCTGGAACGGGTTCTGAATTCAACCCATGCAAAGCCTGACTCAGGAGCCACAGTGAAGTCCAGGAACCAGTCCATACTGCCTGTCCCAATCCACCCTGTGGCCCACAGGTCAGGTATTGAAAGTGTCTGTAAATGCGTTTCCACCCTGACCACTCTGGATCCAGTCGAGGTTGGGGAAAGCTGAATTCCTGGAGTCTCTTCTTGTggtatttcttcttcttcttttatgcAACCAGTGTTGGGAATCACAGACTACTCAGAAACCACAGGAAATAATCACAACATTTGGGAATACACAATTCAAACTAAGGCGAGAAAAATAAGGCAGGAATATCAAATCCCACACACTATCCTTAACCTATGAAAAAATACTGTGGTATtaccaaatatattattttacccaAGTATTCCCAATTTGATTCACAGAAGAGTTCCTGAAAAAGGAACCACATTCAGCAAATGTTGAACAGTTTCTTCTGGAAGTCTTTCTCTGCCTCTAATACGCACAGACTGGAAAGCTTTTAAACTGACTACAGCTTCTTCTGGTTCATTTTCTCTCAAAGGTATGCAAAGTAATACATCATTTGGCAAACAAACCTACTTTTACTCCAACATCAGAGTGTTCCTCACTTGGGACTTTGGACTCAATTTAAGTCAGACTGCAGAATTTCTGTAGCTATCAATAACAAAACTTTCCCCTTTGAGTCAATAATCATCCGTAGAAAGACTACTAAATCTGGAAGAGACACCGGCGAGATTTGGCACCTCCTAGTCATCAGAGAGAACACAAATCTTTCCACTGTGGAAATGTCACTTCTCCCAAGATCTCCGGGTCAGGGCTGTGTCCTCTGCCGGTTCCTAAAGTGAGACGGGCGCGTAGGGTGTCGAACTGAATAGCTGCCAAGCTGAATGGCTGGCTGTAACAGTCTGGTGCCGGGCCTGGGTGTGCCCGACAGGTACAGCGATGTTCCCCAGCAGCTGATGAAGTGATCGTGTGCAGCTGTGAAAGTAAACTCAGTGTGGCTcttctttttgttattgttgctctcgtcaaaggaaaaaaaaaatatgttacaaATGAGCTTTAATGTTCTGCGACACGTTAAGTTACC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU54137 True 3691 lncRNA 0.39 1 27055552 27059242

Neighbor

gene id symbol gene type direction distance location
AMCG00013280 NA coding downstream 54095 26999574 ~ 27001457 (-)
AMCG00013278 NA coding downstream 148586 26903814 ~ 26906966 (-)
AMCG00013279 NA coding downstream 163134 26888488 ~ 26892418 (-)
AMCG00013276 NA coding downstream 222863 26830584 ~ 26832689 (-)
AMCG00013277 LOC102221885 coding downstream 234575 26813858 ~ 26820977 (-)
AMCG00013292 NA coding upstream 86405 27145647 ~ 27159340 (-)
AMCG00013294 LOC106589628,LOC102791232,LOC102301473,LOC101472949,LOC100695060,LOC101161443 coding upstream 240585 27299827 ~ 27307855 (-)
AMCG00013293 NA coding upstream 277048 27336290 ~ 27339310 (-)
AMCG00013297 NA coding upstream 439433 27498675 ~ 27508068 (-)
AMCG00013300 NA coding upstream 513673 27572915 ~ 27581176 (-)
G43412 NA non-coding downstream 5710 27049568 ~ 27049842 (-)
G43410 NA non-coding downstream 8989 27046361 ~ 27046563 (-)
G43400 NA non-coding downstream 60248 26994372 ~ 26995304 (-)
G43204 NA non-coding downstream 688332 26366979 ~ 26367220 (-)
G43194 NA non-coding downstream 743408 26309353 ~ 26312144 (-)
G43425 NA non-coding upstream 67538 27126780 ~ 27126988 (-)
G43435 NA non-coding upstream 99059 27158301 ~ 27158729 (-)
G43518 NA non-coding upstream 654797 27714039 ~ 27717043 (-)
G43590 NA non-coding upstream 906770 27966012 ~ 27966233 (-)
G43592 LOC105901958,LOC107704008 non-coding upstream 1001602 28060844 ~ 28061169 (-)
AMCG00013264 NA other downstream 498228 26553549 ~ 26557324 (-)
AMCG00013258 NA other downstream 571138 26479611 ~ 26484414 (-)
AMCG00013246 NA other downstream 1263793 25786143 ~ 25791759 (-)
AMCG00013245 NA other downstream 1277829 25776374 ~ 25777723 (-)
AMCG00013241 NA other downstream 1427300 25588487 ~ 25628252 (-)
AMCG00013295 NA other upstream 213987 27273229 ~ 27293073 (-)
G43473 NA other upstream 509522 27568764 ~ 27569151 (-)
G43594 NA other upstream 1008971 28068213 ~ 28072787 (-)
G43684 NA other upstream 1408070 28467312 ~ 28467906 (-)
G43869 NA other upstream 2194154 29253396 ~ 29254316 (-)

Expression


Co-expression Network