G43476


Basic Information

Item Value
gene id G43476
gene name NA
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 27589139 ~ 27590818 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU54201
TTCattggtattattttattagtgttggcaaaaatgtatttataacagTGACAATAGGAAAATAACAACCTGATATCAGCCACAGACAATTAGATTAGTTTCTCAGAGTAATATACACAAAATGAGTAACAAACAAAACTTCTgggtacatttgtttttaattgcatcatACAAGAAGGTTCTCAAAGTcccttgttttgaaatgtgaagtAACTTGTTTTACAGTAGCAGAAAGATGAACATCTACAGAGATATATAGAGTTTACAACCTTATTGACACAgaaggacaaaaaacaaactagagaaataattattctggaGCATAGGAAGTAACATggcatgacatttgttttaatgtaattattttgcataaaaaGGATAAGGTTCCGTTTATTTCAAATTCCTCACCAACATCAGCTCACTGATCCGTATACATTTGAGCAGAAACTAATTTTACTCTTTTATAAATGCTACAAATCCTTACCTGACAAGgaatactgtttttaaaagccCACTAAAATCAGGCTTTGACGTagtgtcatttttatttaaagaagtaTTTGAATCCAATTTGATAAACAAATATGAgcgttattttttatttattattctcgtttgtttgtttgtttgtgtgtatatatacaatttaacaaccaccccccccccccaaaaaaaaaaaaaaaacataattccttcataaaactaaataaaaaacattttgataaatTACATGGTTAACAAAAACAACCTGGTATGACATGAATGCAACTTCTCTTCAATGTCAATACATGACTGCAGAGCTACTGATTCATTTGCAATActtaatcaataataaaatcatatgtATCTTGGATTACACCcgatttattgtattatttttgaaaagtatGATCCGAAGGAAGTCACAAAGTGGAAAAAGTCTGGACAATACATATAGGGCGATACAGCAGAGCTACCGCGGTTCTATCCAAGGTATTGCGACAATTATTGCTGCCATCACCAGTGCCAAAATAACCACGCCAACCACAGAGCGGGCAACCGGGCAGCACCTCGCTCCTCTTCTGCGTCCTAGTACGACAGCCTGCCCGCCCACTGTGAACACGTCCTCAGCCCCCATGGGTCGACCTTGGCCACTAATGgtaaaaatctgaaaatcagCTGTGATGGTAGGTCTGGAGACGGAGCTGTCCAAAGAGGCCGGTCCGAAAAACTGGGCGAGGTGATGCGAGGCTGGTGGTTGGACGACACAGGACGGATCTGATGTGGACGGACGACAGACATGGACCTGCAGAGTCTGCTCGTCCTGGGTGCAGGTGTGCAAGGGCTGTTTGATGAGAAAAGTCAGGTGCCTGCACATGGGGCAGTTGATGCTCTCTCGGGTGATGGTCCCATCTTTGTTGGCGCTGGACAGTGTCTTGGCCAGGCAGTCGTGGCAGAAGACGTGTCCGCAGCTCAGTTTCCTCTTGGAGGTCTGGAGGCTCTCATAGCACACGGGACACTCATCAGAGTTCAACCCCTCTCGGGGAGACTGGCTCTCGCCTGCAGACATGCTGACGTCTCCGTCCAAGAGCATATGGTGTTTCTCAGAGTTGACTGTTGCAACAGTGGTTTGACTTTGAGATGGTCAAACCCACTGGCATCCATTCAATattgttactaatattattactaagtactaat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU54201 True 1680 TUCP 0.41 1 27589139 27590818

Neighbor

gene id symbol gene type direction distance location
AMCG00013296 NA coding upstream 19844 27548805 ~ 27569295 (+)
AMCG00013288 NA coding upstream 448540 27130164 ~ 27140599 (+)
AMCG00013287 tekt3,LOC107753251 coding upstream 471702 27111850 ~ 27117437 (+)
AMCG00013283 LOC108429730 coding upstream 530218 27036615 ~ 27058921 (+)
AMCG00013291 NA coding upstream 590459 26981675 ~ 26998680 (+)
AMCG00013299 ndel1,LOC108432229,LOC104940291,LOC107672491 coding downstream 1957 27592775 ~ 27609468 (+)
AMCG00013307 ntn1a,LOC107733905,LOC106564677,LOC107555375,LOC106587088 coding downstream 220875 27811693 ~ 27814163 (+)
AMCG00013308 LOC107555375,LOC107733905,LOC107704007,LOC105903456,LOC105012279 coding downstream 283675 27874493 ~ 27875484 (+)
AMCG00013311 NA coding downstream 345595 27936413 ~ 27946835 (+)
AMCG00013312 NA coding downstream 361565 27952383 ~ 27953343 (+)
G43438 NA non-coding upstream 171352 27270028 ~ 27417787 (+)
G43402 NA non-coding upstream 578488 27010372 ~ 27010651 (+)
G43326 NA non-coding upstream 658886 26872821 ~ 26930253 (+)
G43303 NA non-coding upstream 803578 26784953 ~ 26785561 (+)
G43138 NA non-coding upstream 1744545 25807419 ~ 25844594 (+)
G43673 NA non-coding downstream 798871 28389689 ~ 28389960 (+)
G43712 NA non-coding downstream 1147305 28738123 ~ 28738753 (+)
G43810 NA non-coding downstream 1559160 29149978 ~ 29151334 (+)
G43799 NA non-coding downstream 1565881 29156699 ~ 29158493 (+)
G43853 NA non-coding downstream 1586233 29177051 ~ 29178266 (+)
AMCG00013298 NA other upstream 173853 27385665 ~ 27415286 (+)
G43434 NA other upstream 430418 27158302 ~ 27158721 (+)
AMCG00013281 NA other upstream 666000 26892596 ~ 26923139 (+)
AMCG00013286 pde6g,LOC102221623,LOC103367935,LOC102781464 other upstream 684176 26897509 ~ 26904963 (+)
G43309 NA other upstream 777524 26808164 ~ 26811615 (+)
AMCG00013310 NA other downstream 337890 27928708 ~ 27935938 (+)
AMCG00013317 NA other downstream 416696 28007514 ~ 28072799 (+)
G43682 NA other downstream 893455 28484273 ~ 28488783 (+)
AMCG00013336 NA other downstream 1085724 28676542 ~ 28686138 (+)
G43802 NA other downstream 1513471 29104289 ~ 29104577 (+)

Expression


Co-expression Network