G43518


Basic Information

Item Value
gene id G43518
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 27714039 ~ 27717043 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU54249
TTTGTGAACTAGCTGTTGGGCCTAGAGTTGAGCTTTGTTTGCCATCATAAGTCGTAGTGCATAGACAAGCAGTGAGAACGCAGTCATGTTTCTTAGAAGTCCTCCATTTTGTGCTGACAGCTGTATTTCGTGTCAtttaaacagagagagagaggaagacaaagAAATGGCCGACTTCTTGCAGTCGAAATTTCCCAAAAGCAGTTTGAAGAAAACAAATGCCGTAAAGGACAGGAAGATGACATCTCGAGCCCAGCAAACCTCCACACCGTTTGTCACAAAGACGGGGCTGACCTTGCTCAAAGAGTGCTGTGGTTTCACCTGCTCCATCATGTAGCCGGGCTACTGTTGAACACCGAAGCCAGGTTTTTGGGGACAGAGGGACCAGTCTAGAGGCGTAATGCATGGGGGTTGAAGGACTCTTGAGAGGAGAGGATGAGACCTACTGATGTGCATGCATTGGCCTCGGGAGGGAATGAACAAGCAGTTAGGATAGAGAgtgtacatttgtatgtgtgtccAAGCGATATGTGTTCTCTGACTGTTTCCATcgttcaaaaaaaaaaagcattgtttgtTCCCCTAATTGGTCTGCTTTCTGAGGAGCTGTCCATCGTTTCTACTCCAGTGACTTTGAGCTTCAcattttattgcacacaaaatGCACACGGGAGGAGAATGTCTCGTCAGTAAATAAAGCTATCGGAGTTAGATGTGATCCTTCGTCATCGCCGCTCACACTTTCGTTTGCCAGCTTATATGTTTGTTGATGAGAGACACTGGTACATCAGCCATTTcagcatattttaattgataaaattaaatattatgtcTGTGCTCTTTGATGATATAAAGGTTTTCCCCTAGTTGAAGTGTAATGGAGTTGAGAAGAGTAATCAGAAAATCGTTCATGGGAAAGCAAGAGATTTGTACATACTGTGgtcaaagaataaaataagttgGCATTTATCTCTGGCAGTATTGAGAGTGAAAATGGTTTTCAGAGCAGTGCGGTCCTCTTGTACTATTGACAAAGGAGGATGTTTTTGTCATTCTTGGAAAATAATTATCAGGGTCCTTCAATACTGATTCAAGACACCAAGTGATGTAATAGATTGGTGTCCTCCAGCGTCAAGATCTAAATTAAAGTGTCTGGTCAAAAGTGCCGcacaaaaatgtacactgaATATCAGATTCACGGCaaagatttttttcctttcgCTGACAGCACTTTGATCCGTGCAGGCGTCTCTTGTTTTGGCAGTGACACGACACGGGACTCCAGACTGACACTCCAGGCAGTTTTGTGCTGACACACCATTCAGCTGGACTTGTTCTTTGGTTTCCCGTGACATAAATGCTAGCCTTGTCAATGAAGCCCTGTCCTTTCTGTGCTCTTCATATAATCAAGAGTCAGACTCCCTCACGGTTGCTGTCAAAAGGTTTCCTCCCCAAAGTGTTGGGTGTAGCTCtgctttaattgtgttttggttCACTTTGTTTCTGTCGTCGTTCCACGTATCTGTTCTTACCCTCTGGAAACTGagattagattattttttctccctctctctctctcattgctGTAAAATGTCAGTTGTGGTGGTAATATGATAcagtagatttaaaaaaagaacagtgtTATTCCTTTTGGACATTAAGATCAAACTGAAAACGCTATCTTTCTGATTAACGGCTCTGTCCAGAGTatgagatgtgtttgttttggataGCTAAGAGGTGGCTTTTGTACCATATTCTCATGTAGTGTCAGTCTTCACCCCCTGGTTTGTGCGGTTTGTCACATCTGTGTTCTTCAAGCTTTAAATGAACCAGGGCATTGAGAAGGTCATTGATTTGGTAACTCCGTAGTTTTTGTTCAGTCTTTAAAAGCTGGTCTGACAACAAGAGGATGTTACCTTCTGATGGTCTTCTTAAACCCAGGGGAACAAGACAGCTTTTCGCATCTCTGCTACACAATGTCTGTACCACCATTAAGATAGTATTAATATACCTGTTTTAATGGCGCTGATGttatttttgcacatttctCTGTACTACATGTTTGTCGAGCGAGTTGTGCACCGAATGGTATTGTAACATAGTGTTGGATGGAAGACTTATCTTGTCTCAAACAACAGAATCCATCAAGGAGAATAACTTGCTAATTGATCTacttatatttaatgtttgaagGATGCTTGAATCAATTGTCCTGGATTAATTCTTCTTTTAGTGTCCAGTGTTTCTCTGATTGTAAGCACATCTTTATCCAAAGGGAAAGACATGTGGATAGCCTTTCTAAGTATATGTATCATTTGAGTCAGACTGCATGCTTGAACAAACCGTGTTGAACTGTGTCtgctctgtgtatgtgtatgagcTAATGTACTTAGTAGCTGTATGTAATTGTGCAAATGAAGTGTGAATGCGAGTGCCTTGACTTGTCTTGAATACAGACCTGTACCTTCCCCCTGTATTACCTGACTGGGTATTTTGTAACTGTAAGTATCACaagtaaaaaatg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU54249 True 2527 lncRNA 0.41 2 27714039 27717043

Neighbor

gene id symbol gene type direction distance location
AMCG00013304 NA coding downstream 6667 27687865 ~ 27707372 (-)
AMCG00013301 myh10,LOC108272528,LOC107551888 coding downstream 33539 27672378 ~ 27680500 (-)
AMCG00013302 myh10,LOC108442176,LOC108272528,LOC107659961 coding downstream 62486 27618773 ~ 27651553 (-)
AMCG00013303 NA coding downstream 123328 27590091 ~ 27590711 (-)
AMCG00013300 NA coding downstream 132863 27572915 ~ 27581176 (-)
AMCG00013309 NA coding upstream 26995 27744038 ~ 27745915 (-)
AMCG00013305 NA coding upstream 32589 27749632 ~ 27767228 (-)
AMCG00013306 NA coding upstream 57220 27774263 ~ 27788468 (-)
AMCG00013314 NA coding upstream 175295 27892338 ~ 27900889 (-)
AMCG00013313 stx8 coding upstream 200879 27917922 ~ 27927327 (-)
G43435 NA non-coding downstream 555310 27158301 ~ 27158729 (-)
G43425 NA non-coding downstream 587051 27126780 ~ 27126988 (-)
G43417 NA non-coding downstream 654797 27055552 ~ 27059242 (-)
G43412 NA non-coding downstream 664197 27049568 ~ 27049842 (-)
G43410 NA non-coding downstream 667476 27046361 ~ 27046563 (-)
G43590 NA non-coding upstream 248969 27966012 ~ 27966233 (-)
G43592 LOC105901958,LOC107704008 non-coding upstream 343801 28060844 ~ 28061169 (-)
G43593 NA non-coding upstream 345206 28062249 ~ 28062453 (-)
G43626 NA non-coding upstream 512367 28229410 ~ 28234706 (-)
G43670 NA non-coding upstream 626234 28343277 ~ 28347474 (-)
G43473 NA other downstream 144888 27568764 ~ 27569151 (-)
AMCG00013295 NA other downstream 420966 27273229 ~ 27293073 (-)
AMCG00013264 NA other downstream 1156715 26553549 ~ 26557324 (-)
AMCG00013258 NA other downstream 1229625 26479611 ~ 26484414 (-)
AMCG00013246 NA other downstream 1922280 25786143 ~ 25791759 (-)
G43594 NA other upstream 351170 28068213 ~ 28072787 (-)
G43684 NA other upstream 750269 28467312 ~ 28467906 (-)
G43869 NA other upstream 1536353 29253396 ~ 29254316 (-)
G44034 ddx5,kpna2,LOC102776273,LOC103469782,LOC108432045,LOC108261381,LOC100304957 other upstream 2209340 29926383 ~ 30028230 (-)
AMCG00013384 NA other upstream 2323162 30040205 ~ 30061634 (-)

Expression


Co-expression Network