G43590


Basic Information

Item Value
gene id G43590
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 27966012 ~ 27966233 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU54335
GCTTACGTTTCATTCACCCATGGCCGGCACTCAGTCACTGTGTCCaggcgggggggagggggagccgGGAGACAGTCCCTTACCTTCCCGGGAGCTTtggtcttgttgttgttgttgttgggggaGGAGTTGACATCCTCGTGGACCCGATCCAGAAGCCAGAGTAGGAATTCGAGAGCATCGTGCTGCGAGTTGCCTCTGAACTGGGAGCCGTACTTTGAG

Function

GO:

id name namespace
GO:0002011 morphogenesis of an epithelial sheet biological_process
GO:0055113 epiboly involved in gastrulation with mouth forming second biological_process
GO:0090504 epiboly biological_process
GO:0001702 gastrulation with mouth forming second biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU54335 True 222 lncRNA 0.58 1 27966012 27966233

Neighbor

gene id symbol gene type direction distance location
AMCG00013313 stx8 coding downstream 38685 27917922 ~ 27927327 (-)
AMCG00013314 NA coding downstream 65123 27892338 ~ 27900889 (-)
AMCG00013306 NA coding downstream 177544 27774263 ~ 27788468 (-)
AMCG00013305 NA coding downstream 198784 27749632 ~ 27767228 (-)
AMCG00013309 NA coding downstream 220097 27744038 ~ 27745915 (-)
AMCG00013318 NA coding upstream 108308 28074541 ~ 28078702 (-)
AMCG00013319 mchr1,LOC103354888,LOC107580882 coding upstream 162435 28128668 ~ 28130132 (-)
AMCG00013325 LOC107724659,LOC107579769 coding upstream 230724 28196957 ~ 28199793 (-)
AMCG00013326 nup85,LOC106601803 coding upstream 244170 28210403 ~ 28218058 (-)
AMCG00013331 NA coding upstream 526713 28492946 ~ 28495999 (-)
G43518 NA non-coding downstream 248969 27714039 ~ 27717043 (-)
G43435 NA non-coding downstream 807283 27158301 ~ 27158729 (-)
G43425 NA non-coding downstream 839024 27126780 ~ 27126988 (-)
G43417 NA non-coding downstream 906770 27055552 ~ 27059242 (-)
G43412 NA non-coding downstream 916170 27049568 ~ 27049842 (-)
G43592 LOC105901958,LOC107704008 non-coding upstream 94611 28060844 ~ 28061169 (-)
G43593 NA non-coding upstream 96016 28062249 ~ 28062453 (-)
G43626 NA non-coding upstream 263177 28229410 ~ 28234706 (-)
G43670 NA non-coding upstream 377044 28343277 ~ 28347474 (-)
G43685 NA non-coding upstream 504101 28470334 ~ 28470537 (-)
G43473 NA other downstream 396861 27568764 ~ 27569151 (-)
AMCG00013295 NA other downstream 672939 27273229 ~ 27293073 (-)
AMCG00013264 NA other downstream 1408688 26553549 ~ 26557324 (-)
AMCG00013258 NA other downstream 1481598 26479611 ~ 26484414 (-)
AMCG00013246 NA other downstream 2174253 25786143 ~ 25791759 (-)
G43594 NA other upstream 101980 28068213 ~ 28072787 (-)
G43684 NA other upstream 501079 28467312 ~ 28467906 (-)
G43869 NA other upstream 1287163 29253396 ~ 29254316 (-)
G44034 ddx5,kpna2,LOC102776273,LOC103469782,LOC108432045,LOC108261381,LOC100304957 other upstream 1960150 29926383 ~ 30028230 (-)
AMCG00013384 NA other upstream 2073972 30040205 ~ 30061634 (-)

Expression


Co-expression Network