G43592 (LOC105901958,LOC107704008)


Basic Information

Item Value
gene id G43592
gene name LOC105901958,LOC107704008
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 28060844 ~ 28061169 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU54337
GTGTAGTGGCCACCATGCATCCCCCCGTGGTGGTTACACACGGCGTACAGGTCGTACAGGAAGTCGGGTGGCTGGCCGGCCTCGGGGGGCCATGGGTTCAGCGTCTTGGCGCTCTGGCTCCTCTTGACCACGTGGGGTGCCATGTCCAGGCCCGTCAGCGGGAAGCGCACTAGCGTGGAGAGCTTGTTGCGCCGCTCGCCCACCTGCCGGAAGCGCTTCAGGTGCAGGATGAGGATGTCGGGCAGCGTCCACAGGCTGAGCTTCACCATACCCTGCTGTAGTTTCTTACAGTGCGGGCACTTCCACGCGTCGTCCGGGGCCAGCTG

Function

NR:

description
PREDICTED: ubiquitin carboxyl-terminal hydrolase 43-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU54337 True 326 lncRNA 0.65 1 28060844 28061169

Neighbor

gene id symbol gene type direction distance location
AMCG00013313 stx8 coding downstream 133517 27917922 ~ 27927327 (-)
AMCG00013314 NA coding downstream 159955 27892338 ~ 27900889 (-)
AMCG00013306 NA coding downstream 272376 27774263 ~ 27788468 (-)
AMCG00013305 NA coding downstream 293616 27749632 ~ 27767228 (-)
AMCG00013309 NA coding downstream 314929 27744038 ~ 27745915 (-)
AMCG00013318 NA coding upstream 13372 28074541 ~ 28078702 (-)
AMCG00013319 mchr1,LOC103354888,LOC107580882 coding upstream 67499 28128668 ~ 28130132 (-)
AMCG00013325 LOC107724659,LOC107579769 coding upstream 135788 28196957 ~ 28199793 (-)
AMCG00013326 nup85,LOC106601803 coding upstream 149234 28210403 ~ 28218058 (-)
AMCG00013331 NA coding upstream 431777 28492946 ~ 28495999 (-)
G43590 NA non-coding downstream 94611 27966012 ~ 27966233 (-)
G43518 NA non-coding downstream 343801 27714039 ~ 27717043 (-)
G43435 NA non-coding downstream 902115 27158301 ~ 27158729 (-)
G43425 NA non-coding downstream 933856 27126780 ~ 27126988 (-)
G43417 NA non-coding downstream 1001602 27055552 ~ 27059242 (-)
G43593 NA non-coding upstream 1080 28062249 ~ 28062453 (-)
G43626 NA non-coding upstream 168241 28229410 ~ 28234706 (-)
G43670 NA non-coding upstream 282108 28343277 ~ 28347474 (-)
G43685 NA non-coding upstream 409165 28470334 ~ 28470537 (-)
G43686 NA non-coding upstream 413939 28475108 ~ 28475326 (-)
G43473 NA other downstream 491693 27568764 ~ 27569151 (-)
AMCG00013295 NA other downstream 767771 27273229 ~ 27293073 (-)
AMCG00013264 NA other downstream 1503520 26553549 ~ 26557324 (-)
AMCG00013258 NA other downstream 1576430 26479611 ~ 26484414 (-)
AMCG00013246 NA other downstream 2269085 25786143 ~ 25791759 (-)
G43594 NA other upstream 7044 28068213 ~ 28072787 (-)
G43684 NA other upstream 406143 28467312 ~ 28467906 (-)
G43869 NA other upstream 1192227 29253396 ~ 29254316 (-)
G44034 ddx5,kpna2,LOC102776273,LOC103469782,LOC108432045,LOC108261381,LOC100304957 other upstream 1865214 29926383 ~ 30028230 (-)
AMCG00013384 NA other upstream 1979036 30040205 ~ 30061634 (-)

Expression


Co-expression Network