G43594


Basic Information

Item Value
gene id G43594
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 28068213 ~ 28072787 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU54342
tgttttatttgcagtattaaaaataaaaccatatatCATGTAAAGCAGACATCTTAGGTAAATACAAACCTTTGTTgtcattataattttataacGTGTGTGCTAGGCCCATTTTATACCCACCCTTCAACAGCTGACAAGATGGACTTGATTGAAGTTCTACGTTTGTGCTTTACCCTCCGACACCAAGCCCACCGAACAGAACTCGAGAGTCCACATTATTTCACATCTACAATTATTTACAAAGCAGGTATAAATTGTAAAACCTTACAAAAAAAGGATATAAAAACATCTCAACCCCACACATTTCACAaagtactgaaaaaaaaaaatccttcattCACATActaagttttttctttttattcttttccctcattattttttatttctgtttttacaagTGCTCATTTTGGTAAACATTGTGATTGGGTGCTTGTGGTGTATGGATGTAAAGAGAAGCAGGAACAAAGACATTAAtattggaaacaaatacaaaatgcaagcTTTGGATCTTGTTCAGATTTTTAATCCTCTGTTCCTTTTCTTCTGTAAAGCAATTCAATGAAACAAACCcgaaactaaacaaataattaaatgtgaactGCACTGGTAATATCCGTCTGAATATGGATGTGCACTCTTGGGCCTGCAAGATAAGACGTAAATGCAGTACAAACTTTATAATAAAGGCCACTGTACAATTATGAtaatcaagctttttttttttcttttacattctCTGACTAATGCCTTTTACATACAGCAATTTGGCAAGAATTCCTTCGAGTGGAATTACATCTAATAAGGGACAAACATACTGAAAACCAAAACTTTGCTGTTGACTTCTGGTTTGTCATTAAACCCAGAAGTTTTAATGATCACAGACCAAAAGAAACCCCCCCACCGCCTGCCGTTTTTTCCAGAAAGCTATAGAGATCTTGTTGGGACTTTATGTGCAAGAGGGAGGATCCCGGCCACTTAAGATTGCACTGCCAATGATCTTGAGAAGGGTTATGACAAGCCACTTACACAATTAATGATGTAACTTTGggaaaactgagaaaaacagAATCTGGAAATAAATGGTTCTGTTGAGCAAGAGTTCATAGTCATATCATCGTTCTGTGTGCAAATGATAGTAAGTGgtgttaaaaaaatgacttgAATAGTGTAGAAATACACAATCTGTGGCGAAACAACCATTTTAGCATTCATCCCGGTAAATTCTAAGAAAACAGCGCCGCTGGGAGATGTTAAATCGGCAGACGACTCCAGCTTCCACATAAAAAGCAAAgatgcagaaaataaacagttagATTCATTGAGTAATATGTGATTTTTCAGTTCCCCTTGGGGAGACCTCCATTACACTTAACAGCAATTGATCAAAGTAATCGTCGCACTCAGATAAAACTGCAAAGAGCTGCCAGCATTTTGTTCTAGATGTAAAAGGGCTGAAAGGTTCCTGGCGTGAGGAATTACTACGACCGAAGGGATGGTATCTGGGATGATTTATATCCACCTGGGAAATCTTTTAGCGCACAAGTTTATGCATATGAAAAATGTGAGAGTACTGTTCCTGCAATAATAACTGCAAAAGAGAAGGATGAAGACTCAATTCTGTACACAGGACCCCGGTGCATTAATTAATGCCCCAGTCAGGCTGCATGTGTGTCATATAAGTTACGGCACAACGTAAAGACTGCCATACAATGAAAAATGAGATGTAAAGCACAGCAGCTGCTCAGGGTATCATAATGCGAAAAAAGTCTGCAAGTTTGAAGCTCTTTCTGGACGTCCTCTGCAATGGTGTATTGCTGTTGTGAATTCGTAAAGGTCATGGATTATAAAATCGCCAACCTTATGCCAAGTACATGATGAACTCTGTGAGGCCAGACATACACTCtaagaaagagaaagatttTAACTATGATGCTTCCAGCCAATTTATTTTCTGGGAAACCGGACTCGTAAAATCAAATTGGTCTCCAAGCCGaacttcagtgtttttatgCATAGCTGGATTCGGACTGCCTTTGTGTTCTAGGTTAGCTCGGCTGGTGACATTTCTTATCGGATACAAACAAGGTCTAGATTTTAGTGATCAGACTGAATTGAGCAGTACGTCAGCTTCTCCTGCATAAAGACCAGGCCTGTGCCGAGTTATTCTCGAAAATGTAACCCTCTTCGGTCAATGTTAAGGGGGGGAGAGCCAATGGGAGCTCAGACAAAGCGTGTAGAGAGGACTTGAAACAGCAGAAGGAATGGGAGTGTCAGAACAAACCAGCTTTGACATTCAATGCCAAGGAGTGGTGCCAAAGAACTGAGGCGAGAAGGCATGGTCACATGTCACTGATGGCTTTTGTATGTGATAAAACACTTAAGTGGTTATCTCTTTTGTTTGGATTGATTTTTGAAATTGGGGTTGTTAAGCAAATGACCCTGTCTGCTTCCCTAAACACAAGCAACGGCAAGGTGTGAAGTCAGTTTAACAGTCTTGTTGCAAATGTAAACATGGTCACTGCACTGCCCCAACACTACACTCAACACATTGCGTGTTCTGGAGACGTTATAAGCCTCTCTCATGAACACACTCTGCTGACCCATCTTACGTTACATGATTTCTTTGGAACAAACTGATCTAAGT
>TU54344
tgttttatttgcagtattaaaaataaaaccatatatCATGTAAAGCAGACATCTTAGGTAAATACAAACCTTTGTTgtcattataattttataacGTGTGTGCTAGGCCCATTTTATACCCACCCTTCAACAGCTGACAAGATGGACTTGATTGAAGTTCTACGTTTGTGCTTTACCCTCCGACACCAAGCCCACCGAACAGAACTCGAGAGTCCACATTATTTCACATCTACAATTATTTACAAAGCAGGTATAAATTGTAAAACCTTACAAAAAAAGGATATAAAAACATCTCAACCCCACACATTTCACAaagtactgaaaaaaaaaaatccttcattCACATActaagttttttctttttattcttttccctcattattttttatttctgtttttacaagTGCTCATTTTGGTAAACATTGTGATTGGGTGCTTGTGGTGTATGGATGTAAAGAGAAGCAGGAACAAAGACATTAAtattggaaacaaatacaaaatgcaagcTTTGGATCTTGTTCAGATTTTTAATCCTCTGTTCCTTTTCTTCTGTAAAGCAATTCAATGAAACAAACCcgaaactaaacaaataattaaatgtgaactGCACTGGTAATATCCGTCTGAATATGGATGTGCACTCTTGGGCCTGCAAGATAAGACGTAAATGCAGTACAAACTTTATAATAAAGGCCACTGTACAATTATGAtaatcaagctttttttttttcttttacattctCTGACTAATGCCTTTTACATACAGCAATTTGGCAAGAATTCCTTCGAGTGGAATTACATCTAATAAGGGACAAACATACTGAAAACCAAAACTTTGCTGTTGACTTCTGGTTTGTCATTAAACCCAGAAGTTTTAATGATCACAGACCAAAAGAAACCCCCCCACCGCCTGCCGTTTTTTCCAGAAAGCTATAGAGATCTTGTTGGGACTTTATGTGCAAGAGGGAGGATCCCGGCCACTTAAGATTGCACTGCCAATGATCTTGAGAAGGGTTATGACAAGCCACTTACACAATTAATGATGTAACTTTGggaaaactgagaaaaacagAATCTGGAAATAAATGGTTCTGTTGAGCAAGAGTTCATAGTCATATCATCGTTCTGTGTGCAAATGATAGTAAGTGgtgttaaaaaaatgacttgAATAGTGTAGAAATACACAATCTGTGGCGAAACAACCATTTTAGCATTCATCCCGGTAAATTCTAAGAAAACAGCGCCGCTGGGAGATGTTAAATCGGCAGACGACTCCAGCTTCCACATAAAAAGCAAAgatgcagaaaataaacagttagATTCATTGAGTAATATGTGATTTTTCAGTTCCCCTTGGGGAGACCTCCATTACACTTAACAGCAATTGATCAAAGTAATCGTCGCACTCAGATAAAACTGCAAAGAGCTGCCAGCATTTTGTTCTAGATGTAAAAGGGCTGAAAGGTTCCTGGCGTGAGGAATTACTACGACCGAAGGGATGGTATCTGGGATGATTTATATCCACCTGGGAAATCTTTTAGCGCACAAGTTTATGCATATGAAAAATGTGAGAGTACTGTTCCTGCAATAATAACTGCAAAAGAGAAGGATGAAGACTCAATTCTGTACACAGGACCCCGGTGCATTAATTAATGCCCCAGTCAGGCTGCATGTGTGTCATATAAGTTACGGCACAACGTAAAGACTGCCATACAATGAAAAATGAGATGTAAAGCACAGCAGCTGCTCAGGGTATCATAATGCGAAAAAAGTCTGCAAGTTTGAAGCTCTTTCTGGACGTCCTCTGCAATGGTGTATTGCTGTTGTGAATTCGTAAAGGTCATGGATTATAAAATCGCCAACCTTATGCCAAGTACATGATGAACTCTGTGAGGCCAGACATACACTCtaagaaagagaaagatttTAACTATGATGCTTCCAGCCAATTTATTTTCTGGGAAACCGGACTCGTAAAATCAAATTGGTCTCCAAGCCGaacttcagtgtttttatgCATAGCTGGATTCGGACTGCCTTTGTGTTCTAGGTTAGCTCGGCTGGTGACATTTCTTATCGGATACAAACAAGGTCTAGATTTTAGTGATCAGACTGAATTGAGCAGTACGTCAGCTTCTCCTGCATAAAGACCAGGCCTGTGCCGAGTTATTCTCGAAAATGTAACCCTCTTCGGTCAATGTTAAGGGGGGGAGAGCCAATGGGAGCTCAGACAAAGCGTGTAGAGAGGACTTGAAACAGCAGAAGGAATGGGAGTGTCAGAACAAACCAGCTTTGACATTCAATGCCAAGGAGTGGTGCCAAAGAACTGAGGCGAGAAGGCATGGTCACATGTCACTGATGGCTTTTGTATGTGATAAAACACTTAAGTGGTTATCTCTTTTGTTTGGATTGATTTTTGAAATTGGGGTTGTTAAGCAAATGACCCTGTCTGCTTCCCTAAACACAAGCAACGGCAAGGTGTGAAGTCAGTTTAACAGTCTTGTTGCAAATGTAAACATGGTCACTGCACTGCCCCAACACTACACTCAACACATTGCGTGTTCTGGAGACGTTATAAGCCTCTCTCATGAACACACTCTGCTGACCCATCTTACGTTACATGATTTCTTTGGAACAAACTGATCTAAGTGATCAatgaaaaaagataataaacatGCCTTATctgatgaagagagagagagagagagaggaaagacctggtaaaataaattgtttgtcCATCTCAGAGTACAGGCTACTGTTGATTGTCAGTGGAAAAAAAGTGTCCGGTTGTTTCATGTTCATTAACACTGCCTTTCTTAGTTCgttttttgaaaattaaaaatgaatccaTTTAAACTACTGATGCAGAAAGTTAATGAAGAAAATGGTCTATACTTTCTTGGGCCAGTTTCAGATTGTCActttcaaacacacactgcaggcaAAGTAAAGGTTTGGTGGTGTTGGCTTTataaaaaaagtgcaaaaaagtaaaaaaaaaacatttttgtatcgatacagtatttgtattatttttgtcatcaCGAGCCTTAAAATCTAGCAGCCATTATGAAATACAAGcacaaataaaatctgttcGTTATTCACAGAGCTCGGCTTGTTACGGTGTGGTTAGCTAAGTTAGTACTAACTGATATGTATCTTTTAAACCACTTCTATTTACAAAGAATGCGGGGAGTGAATTGCTTTAGTGGTgccatacaaaaaatataaataaaatagtcatCTTTCTTCTGTTTTAGATTGTGTTTCTGCATAGATGTCTTGTTTTTCTACATGTCGCTTCCAAATTCcatacaaaaccaaaagaaagagggaaagaaaaataaatctgagccTTTTCGGGAAACTCAGTTCATGGTGTTGAGATACGAGTGCCAGATCTGTGTGAACTAGACATGCTCTTGTTGTACACTTGTATCCAAAGACGTTTGTGAACTGGAAAATCAGTTTACAGAGGCACTTACTGTCAGCTTAGGTGTCACGAAGACACCCTGAACAAAAcgataaaaaaacagaactgataAAATCTAAAGAAACACCCATTCTGCTTAAATCTGAGCTTTTCTCACTCGATCTCCCCAATAACACAACTGCCTTTTCTCTGCATATTAAAATGGCTGCTAATTCCCCACGGGTCACATCCAGCCTGTTGTTTCTCTCGAGACGAGATCAGCATCTCGACTGAGGACTCCTTCAGCGGGAGTGGTGCATCTTGGGAAACGAGGTACACGTTCTAAACTGTACACTTGGTACATATTGCTTGACTTGGAGACGCTTTGAGTCGGGTTTTGTATTTTCCCTCCCACATCTTCAGAAGCTTGATTCAGGCACTGACTTCTTCCTCCCCAGAGACGCGGTGCTGTAGCGCGTCCGCTGCAGCGTGGCGTAGGAGGGCTTGTCGGAGGCGACGCTGCGTGGCGGCACAGGGTTGGACAGACCGTTCTTGTGCAGAGAGGCGGTCCTCCGCAGAGTCAGCTCGGATTTGCTCTGGATGTTGGAGGAGCTCTGGGAGCGCTTGATGTCCACAGCGGAGCGGCTGACCCTGCCATTGGCCAGCTCCTCCCTATTCCTGCTGCTGGTGGCCTTGCCCTCGGCTGCCCTGTTTAACGTGCCGTTGGAGAGAGAgatcctggaggagctgctggTCGCCTCGCTGCTCCTGTGCGCCTCTGACTCCCTGGACTTCCTGGAGTCCTTCTTGAGGAAGTTGGGTTTTAAAAAGGAGAACCTGCCTTCGTGGCTCCTGGTGTCCTCGGTCCTCCTCGCCTTGTCCTCCTCTGGGGGCGACTGCTGTTCACCATCCCCACGATCCCTGGCGCCCGCTAAAGCCTTGCTCCTCTTCAAGGTGGTGTCCCAGCTGGGTGGCGGATTGGCGCCTGACTGGATGACCCCACTGGAGCTCCTCCTGGGCCCCCCTGCAGAGGTGTCCTCAGGCTTTCCTGGCAGATCCTGCTTGGTCTTCTTGGACGTCCTCCTGGTCAGGGTGCCGTCATCCTTCTGTTTGCTGCTCCTCCTCGAGGCGCTGCTCCTCTCGCTGGCCTGTCTGGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU54342 False 2650 lncRNA 0.39 1 28070138 28072787
TU54344 True 4575 TUCP 0.42 1 28068213 28072787

Neighbor

gene id symbol gene type direction distance location
AMCG00013313 stx8 coding downstream 140886 27917922 ~ 27927327 (-)
AMCG00013314 NA coding downstream 167324 27892338 ~ 27900889 (-)
AMCG00013306 NA coding downstream 279745 27774263 ~ 27788468 (-)
AMCG00013305 NA coding downstream 300985 27749632 ~ 27767228 (-)
AMCG00013309 NA coding downstream 322298 27744038 ~ 27745915 (-)
AMCG00013318 NA coding upstream 1754 28074541 ~ 28078702 (-)
AMCG00013319 mchr1,LOC103354888,LOC107580882 coding upstream 55881 28128668 ~ 28130132 (-)
AMCG00013325 LOC107724659,LOC107579769 coding upstream 124170 28196957 ~ 28199793 (-)
AMCG00013326 nup85,LOC106601803 coding upstream 137616 28210403 ~ 28218058 (-)
AMCG00013331 NA coding upstream 420159 28492946 ~ 28495999 (-)
G43593 NA non-coding downstream 5760 28062249 ~ 28062453 (-)
G43592 LOC105901958,LOC107704008 non-coding downstream 7044 28060844 ~ 28061169 (-)
G43590 NA non-coding downstream 101980 27966012 ~ 27966233 (-)
G43518 NA non-coding downstream 351170 27714039 ~ 27717043 (-)
G43435 NA non-coding downstream 909484 27158301 ~ 27158729 (-)
G43626 NA non-coding upstream 156623 28229410 ~ 28234706 (-)
G43670 NA non-coding upstream 270490 28343277 ~ 28347474 (-)
G43685 NA non-coding upstream 397547 28470334 ~ 28470537 (-)
G43686 NA non-coding upstream 402321 28475108 ~ 28475326 (-)
G43687 NA non-coding upstream 402669 28475456 ~ 28476100 (-)
G43473 NA other downstream 499062 27568764 ~ 27569151 (-)
AMCG00013295 NA other downstream 775140 27273229 ~ 27293073 (-)
AMCG00013264 NA other downstream 1510889 26553549 ~ 26557324 (-)
AMCG00013258 NA other downstream 1583799 26479611 ~ 26484414 (-)
AMCG00013246 NA other downstream 2276454 25786143 ~ 25791759 (-)
G43684 NA other upstream 394525 28467312 ~ 28467906 (-)
G43869 NA other upstream 1180609 29253396 ~ 29254316 (-)
G44034 ddx5,kpna2,LOC102776273,LOC103469782,LOC108432045,LOC108261381,LOC100304957 other upstream 1853596 29926383 ~ 30028230 (-)
AMCG00013384 NA other upstream 1967418 30040205 ~ 30061634 (-)
AMCG00013386 NA other upstream 2007827 30080614 ~ 30083441 (-)

Expression


Co-expression Network