G43626


Basic Information

Item Value
gene id G43626
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 28229410 ~ 28234706 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU54394
CAGGCAAGAAAAACACCACAGTGGCAACTTCATATCaatctttattgtatttagaaACTCACGCATCAAATCCTTTACCATTTACATCAGGGAGAATGAGAGCAGTTAAACCTCATGCCTTTTCCAGCAGGCCTGATGCACTACAGGATGGGCTGAAATGAAAAGATACATAAAGTGCTTCGGTTGATGCTttcgaaaaagaaaaaaaaaaaaaaaaaaaagtcaaaaacaaTGAGAAACTGGACTGAAGTTCCATGGCTCACACAGATAAggggggataaaaaaataagcatgaaAGAGTTCAAAGAAAGCAAGCTCAGCCCAGGATGAGACTGGACTTTCCCCCAGGGGGGTTTCTCCGCCCGCCTGGCGCGGCAGCAGGTACTGTGGGTGCCGAGGGCTGTGGCGCCTCCTCCTTCTGTTCCGGGATGATTTCGACCTCCTCCGAATTTTCTATGAAAATAAAGACCGTTGTGGATCTCCATTCATAATGACAGACAACAGCAGCTCATTTACAGTCAGACACTGAATTGGGGACCGTGTGCAGGTTTGTTACAACCAGACTAACATCCACTTGTTGTTCCCCAAAATGGTCTTCAGCTTTAGGAAACTTTACTTTAGGATGTTGGTGGGCCACATCTCGGAGATGCCGACACTGTACGTGAAAGCGAGGGGGAGTTAAGCAGCTTGTAATTAACCAAGTCCAAACTCCAGCTTGTGCACTTACCCTCAGAGGAGGTGAAGTGCCTTATGGTTAAGACTCACACTGCTGAGTACAAGatgatttcctttttaaacCACAGCCGAGCAGCACATTTTTtgtgcatgtatgtttttacaGCTTAATGATTAGTCAAGCATGAggtttccccccaaaaaaaaataaaaaaatctaaatgtcgAACGTTTAAATGGGAAAAATCTTGACATGACTCCATTTCCAAGAACCCAATTTGTGGTAGCCCATGTCTCATGCACATCAGCTTGATTTATCTCCTGTGCATGTATACATTACAAGCTTGTAAAAGACTATGGGAGTGAAAAAGCAAGTTTTTAAACTGCGGACCACCTACCACCAGAATATTTAAGGAGAATATAAAGACCACTGAAGGGATGACTAgcttaatatataaataacaggataaaggttttttttaaatagcttgtCAAAACTGAAAATGGAAGCAAATGCTCCACGTTGAAACACACCCCAGTCTGTTTGCTCATatggcattaaaataaatactaaaggCTATAGTTTGATAGCAATCAAGGTTTAAACCTCAAATCTGTATGAGGAGTAATAAGCCAGTAGCAAGAGCCAGCCATTCCCCATTACTGAAACTGTTGAACTGTAGCTacaccctccccaccccctaTGAAACAGTGATTGAGATCTTAACACAATGCTCTTttgacatgaaaataaaaggaatatatataaaagatcaAACAGCTGATTTACAAGATTAATTTAAGGATGTTTATTAATCCTGAAGGGGAATGTTCGACTTCCCCATTATCAATACTTGACAAGAACCTGTAACAATGGCATTGCAACATTAGATGCACCTGACTGACTTTTATCCCTGTGTATTGTATGGATTAAGGACAATCGCATAAGAAAAGGATGAGAATGTGTAGACAATGTGAAGCCACCTGGAGCTGCAGAATAAATGCGTTTTCACTGCTGATGTATTTGGAAACCCTAAAGTGCAACGAAACCTATAATGTATTTTAGGTTACACTGGATTATATAGAGCTATTGTGCAGGAATTTTAAAATTGATACAAATGCACCCAATCCTCCAattaaaggtttaattaaaatggtaaagtaATCCAGGCAATTAACAATCGAATCACAAATTAGTTTAAAACTAGCAACAAAAAAGCTATATAGatctatatagatatacatcTTCCACCTCCTTAAACCTAAGAGGCCAACGACTCCAGGAATTAATGCATGTGGTTTGGACCTTTTCAATCTATATTGTATATTCATTAATCCAGTgctatacacatttaaaatacttgtcAAACCACACAATTGCATGCTATGTATGagtatacatataaaaatgagtaACTTACCAATAATTGCCCTTTCCATTTCACCATCCTGCAAACAAATGGACAAGCATTAAGACTAAACTCTTAAAAAGCTTCAGAGTTTTGACAACTGCAAATCAAATTCTAGTAACCGTTCATAGTGTCCAGTATTTGTTCACCAGATGTTCAAAGGGTTTTAGAGTAAAATATAGTTTTGGAGTAATTGAGACCGAATGACAGATTAAATTGTTGCATTAGACTGTGTACCATATAATCCAGTGAGATACTCACTCCGGTTTTTGCTTCCTCGGAGACGCTGTTGGACTGCACAGCAGGCTGGGTGTGACATCGTCTGAGGGGAGCGGAGGGCTCGCCACTAAAGATACCAGAGGGCTTTCCACCTGCAAACAAGGACAAATGTGCGTTTACGCCAAGTGTAGTAAGTAGTTTTGGGTTCCGACTTCAAGTGTCAAGTGAATTACAAATAAGGGAATCTGTTTTAATAGATCAAAAGCCTCAGAAAGCAGAAGTTAATTTAAGgattataaatgcataaagATTGGAAAATCTAGGTACACTATTCAAACGTCATACAGGAAGTGAGGAAACCATTTGCATTGTTCTGAATTCTGGCAAATGGCTTTTGGCCTCCATTAACAcccaagacaaaaaaaagaggggggggggttataaCTACACAAGCCTTTCAATACAACTTGCTGTTTGACAAGTTCATTGTAAtgtaatagaaaaaacaaaaaacaagagcaGGCTTAGAGATTGATTCCAAGCAAGCACAAGAATGCTTTAGTGAATGGCTACTGAAACTTCAAACTATCTGAATGAACTTATTACGCAACAAGTGACTGTCCACAGATTTAAAGACTGTTCTAAAGCAGGGTCTCAAGGGGTGTAAAATGCTCAGATATTTTGAACCCccaaaaatgcatttatcaaTGTAAATCAATGTAGAGGCTCTGTAAAGCAACAGGAATTGCTAAAATCTATTGTACATTTATACAATACCTTTAAAgcaaaactgacattttctaATAAAATTCTATATAGATTAAAAATGATCTAAATAGATCTGAAATCTGGGGAAAATGTCACCCCTCGTCAATTTCCCCTCACTTTACAAGTAACAATTTGCATCTTACTGAGGCCATATCTTCAGAAGTTGAACATCTGAAAATTGCTATTCAATTTCTCAGTCTGTTGACCATGCCTTGTTACCATGCTATACACAAACACTGCCGATTCTTACATTTTAAGCAACCGAAAAACACAAAGTGGGGGATTTATGAATGATCAGTCATGTCCCTGAATAGTTCACAGCAAATAACTGCCTAATCCAGGCACTGGTTATAGTACATATGAAATATCTGCTGGGTAAATGCTTCTTAATCCAGCCAGACAGACATTGTGCAATCAAACACCAATCCCCCtgatcatacatttaaaatcaaatacaactTAAACTCCAGCAAGAAACTAAATGGGGAAAACTGCAAGATTGCCTTTTAGTCTGTTGTGACCATCAAAAAACAGATGGAAGGGCAGGGGGCATCTAGTTTGCTTCAGTTTCAGATTAAATCTTTGCTCATGCAGAAGGATGGGGAAGATCTAAGGAACCCACAGGATGTAAAACTGGTTTATTGGATTCAGAAACTGGTTGAGGATTTAAATCCCTACAGCTAACCACTAATAATCTAGAACTCCCAACACCATGGAGGAACATCCAGCCAAGATTTAGGAATCGGTGCACAGCCCATTTTCTGCAAATGCTTGAAGTACAGACACTGGCTGTCTGGCTGAAGGGAAGGTCAGTTGGTGTGAGAGCTGGGAACCCAATTAATTGGGGCTGTGGCTGGAGGGACCTTTGAGAAACCCTGTGCTACCTTAACATGAGCTGTGAAACAATAAGGGCGGCAGTATCTACCCGGTGGATTGTTCCTCCTGTGAGCGTGGGGGTCCTCCGGCTCCGCGAAGATGTTGGAGGCGGTTCTGTTCTTGCGGGTGTTCTGGGCTTTGCCTTCCTCGTCCCCATTGCCAAAGGAGATGTTGGAGCCTCCGCCCGGGGGCCGCAGCACCCTGTGAAAGGCCAGCGGTGAAGCCATCAGTGAGGTCCGCACACAAGCACTGCAGCACCACCCTGCTGCACACAGCCTACAACAGTCATCTGAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU54394 True 4242 lncRNA 0.40 2 28229410 28234706

Neighbor

gene id symbol gene type direction distance location
AMCG00013326 nup85,LOC106601803 coding downstream 11352 28210403 ~ 28218058 (-)
AMCG00013325 LOC107724659,LOC107579769 coding downstream 29617 28196957 ~ 28199793 (-)
AMCG00013319 mchr1,LOC103354888,LOC107580882 coding downstream 99278 28128668 ~ 28130132 (-)
AMCG00013318 NA coding downstream 150708 28074541 ~ 28078702 (-)
AMCG00013313 stx8 coding downstream 302083 27917922 ~ 27927327 (-)
AMCG00013331 NA coding upstream 258240 28492946 ~ 28495999 (-)
AMCG00013332 NA coding upstream 267316 28502022 ~ 28521437 (-)
AMCG00013339 nptx1l,LOC107665615,LOC107569544,LOC106601408,LOC103375324 coding upstream 537227 28771933 ~ 28777474 (-)
AMCG00013348 prpsap1,LOC106606986,LOC106533983,LOC108255900,LOC105013149,LOC101163819 coding upstream 739984 28974690 ~ 28989005 (-)
AMCG00013349 LOC105417629 coding upstream 756731 28991437 ~ 28996380 (-)
G43593 NA non-coding downstream 166957 28062249 ~ 28062453 (-)
G43592 LOC105901958,LOC107704008 non-coding downstream 168241 28060844 ~ 28061169 (-)
G43590 NA non-coding downstream 263177 27966012 ~ 27966233 (-)
G43518 NA non-coding downstream 512367 27714039 ~ 27717043 (-)
G43435 NA non-coding downstream 1070681 27158301 ~ 27158729 (-)
G43670 NA non-coding upstream 108571 28343277 ~ 28347474 (-)
G43685 NA non-coding upstream 235628 28470334 ~ 28470537 (-)
G43686 NA non-coding upstream 240402 28475108 ~ 28475326 (-)
G43687 NA non-coding upstream 240750 28475456 ~ 28476100 (-)
G43688 NA non-coding upstream 242449 28477155 ~ 28477508 (-)
G43594 NA other downstream 156623 28068213 ~ 28072787 (-)
G43473 NA other downstream 660259 27568764 ~ 27569151 (-)
AMCG00013295 NA other downstream 936337 27273229 ~ 27293073 (-)
AMCG00013264 NA other downstream 1672086 26553549 ~ 26557324 (-)
AMCG00013258 NA other downstream 1744996 26479611 ~ 26484414 (-)
G43684 NA other upstream 232606 28467312 ~ 28467906 (-)
G43869 NA other upstream 1018690 29253396 ~ 29254316 (-)
G44034 ddx5,kpna2,LOC102776273,LOC103469782,LOC108432045,LOC108261381,LOC100304957 other upstream 1691677 29926383 ~ 30028230 (-)
AMCG00013384 NA other upstream 1805499 30040205 ~ 30061634 (-)
AMCG00013386 NA other upstream 1845908 30080614 ~ 30083441 (-)

Expression


Co-expression Network